Variant report

Variant	rs1900060
Chromosome Location	chr11:26994375-26994376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10835089	0.86[ASN][1000 genomes]
rs10835091	0.93[JPT][hapmap]
rs10835092	0.93[JPT][hapmap]
rs11029763	0.86[ASN][1000 genomes]
rs12271524	0.95[ASN][1000 genomes]
rs12275693	0.93[JPT][hapmap]
rs12277118	0.97[ASN][1000 genomes]
rs12277339	0.95[ASN][1000 genomes]
rs12279221	0.97[ASN][1000 genomes]
rs12287195	0.85[ASN][1000 genomes]
rs12288662	0.97[ASN][1000 genomes]
rs12289852	0.97[ASN][1000 genomes]
rs12290211	0.97[ASN][1000 genomes]
rs12421183	0.93[JPT][hapmap]
rs12576904	0.86[ASN][1000 genomes]
rs12577913	0.97[ASN][1000 genomes]
rs1822893	0.84[ASN][1000 genomes]
rs1822894	0.84[ASN][1000 genomes]
rs1992677	0.94[ASN][1000 genomes]
rs4922778	0.97[ASN][1000 genomes]
rs4922779	0.97[ASN][1000 genomes]
rs7106676	0.93[JPT][hapmap]
rs7110466	0.96[ASN][1000 genomes]
rs7110482	0.96[ASN][1000 genomes]
rs7110575	0.96[ASN][1000 genomes]
rs7111860	0.93[JPT][hapmap]
rs7117332	0.97[ASN][1000 genomes]
rs7122421	0.97[ASN][1000 genomes]
rs7125909	0.93[JPT][hapmap]
rs7131042	0.97[ASN][1000 genomes]
rs7949760	0.97[ASN][1000 genomes]
rs986792	0.97[ASN][1000 genomes]
rs986793	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv897146	chr11:26913936-27019331	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv949332	chr11:26935972-27223492	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv897147	chr11:26983363-27258899	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26993200-26996600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr11:26993800-26994600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:26993800-26995600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:26994200-26995200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:26994200-26995200	Weak transcription	NHDF-Ad	bronchial
6	chr11:26994200-26995600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:26994200-26997600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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