Variant report

Variant	rs7111860
Chromosome Location	chr11:27015690-27015691
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10835087	0.93[ASN][1000 genomes]
rs10835088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10835090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835092	0.88[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.85[MEX][hapmap];0.98[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11029769	0.85[MEX][hapmap]
rs11822375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12275693	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279228	0.95[ASN][1000 genomes]
rs12280405	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281076	0.95[ASN][1000 genomes]
rs12282845	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12284935	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12285735	0.95[ASN][1000 genomes]
rs12286240	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12286282	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12293478	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12577937	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12578018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1445333	0.95[ASN][1000 genomes]
rs34681631	0.93[ASN][1000 genomes]
rs36102095	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59417854	0.95[ASN][1000 genomes]
rs59447780	0.95[ASN][1000 genomes]
rs59654892	0.95[ASN][1000 genomes]
rs7106676	0.88[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.91[ASN][1000 genomes]
rs7107282	0.95[ASN][1000 genomes]
rs7125909	0.88[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7940518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs959042	0.95[ASN][1000 genomes]
rs959043	0.95[ASN][1000 genomes]
rs959044	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv897146	chr11:26913936-27019331	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv949332	chr11:26935972-27223492	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv897147	chr11:26983363-27258899	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1040964	chr11:26998213-27223388	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv540975	chr11:26998213-27223388	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv949575	chr11:27005687-27233359	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv533052	chr11:27006061-27225374	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv553912	chr11:27014032-27240951	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:27014600-27020000	Active TSS	Aorta	Aorta
2	chr11:27014800-27017600	Active TSS	Fetal Kidney	kidney
3	chr11:27014800-27017600	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr11:27015000-27015800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:27015000-27015800	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr11:27015000-27015800	Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr11:27015000-27017600	Active TSS	Brain Substantia Nigra	brain
8	chr11:27015000-27019000	Active TSS	Stomach Smooth Muscle	stomach
9	chr11:27015200-27015800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:27015200-27015800	Active TSS	Brain Hippocampus Middle	brain
11	chr11:27015200-27015800	Active TSS	Fetal Muscle Leg	muscle
12	chr11:27015200-27015800	Active TSS	HSMMtube	muscle
13	chr11:27015200-27016000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:27015200-27016400	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr11:27015200-27016800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr11:27015200-27017400	Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr11:27015200-27017600	Active TSS	Brain Anterior Caudate	brain
18	chr11:27015200-27018400	Active TSS	Right Atrium	heart
19	chr11:27015200-27019000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:27015200-27019200	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr11:27015400-27015800	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr11:27015400-27015800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:27015400-27015800	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr11:27015400-27015800	Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr11:27015400-27015800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:27015400-27015800	Active TSS	Adipose Nuclei	Adipose
27	chr11:27015400-27015800	Active TSS	Brain Germinal Matrix	brain
28	chr11:27015400-27015800	Active TSS	Fetal Brain Female	brain
29	chr11:27015400-27015800	Active TSS	Fetal Muscle Trunk	muscle
30	chr11:27015400-27015800	Active TSS	Placenta	Placenta
31	chr11:27015400-27015800	Active TSS	Fetal Stomach	stomach
32	chr11:27015400-27016000	Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr11:27015400-27016000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:27015400-27016000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:27015400-27016000	Flanking Active TSS	HMEC	breast
36	chr11:27015400-27016200	Active TSS	Fetal Heart	heart
37	chr11:27015400-27016400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
38	chr11:27015400-27016400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:27015400-27016400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
40	chr11:27015400-27016400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
41	chr11:27015400-27016400	Active TSS	Fetal Thymus	thymus
42	chr11:27015400-27016600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:27015400-27016600	Flanking Active TSS	Liver	Liver
44	chr11:27015400-27017400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:27015400-27017400	Active TSS	Brain Angular Gyrus	brain
46	chr11:27015400-27017600	Active TSS	Right Ventricle	heart
47	chr11:27015400-27017600	Active TSS	NHLF	lung
48	chr11:27015400-27018000	Active TSS	Psoas Muscle	Psoas
49	chr11:27015400-27018200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:27015400-27018200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links