Variant report

Variant	rs59417854
Chromosome Location	chr11:26963078-26963079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10835087	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10835088	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10835090	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10835091	0.95[ASN][1000 genomes]
rs10835092	0.86[ASN][1000 genomes]
rs11822375	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12275693	0.95[ASN][1000 genomes]
rs12279228	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280405	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12281076	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282845	0.86[ASN][1000 genomes]
rs12284935	0.86[ASN][1000 genomes]
rs12285735	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286240	0.86[ASN][1000 genomes]
rs12286282	0.86[ASN][1000 genomes]
rs12293478	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12421183	0.95[ASN][1000 genomes]
rs12576182	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12577937	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12578018	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1445333	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34681631	0.95[ASN][1000 genomes]
rs36102095	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59447780	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59654892	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7106676	0.86[ASN][1000 genomes]
rs7107282	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111860	0.95[ASN][1000 genomes]
rs7125909	0.86[ASN][1000 genomes]
rs7940518	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs959042	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959043	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959044	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv897146	chr11:26913936-27019331	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv949332	chr11:26935972-27223492	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26953600-26967000	Weak transcription	HSMM	muscle
2	chr11:26959400-26964000	Weak transcription	NHDF-Ad	bronchial

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