Variant report

Variant	rs59447780
Chromosome Location	chr11:26994035-26994036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10835087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10835088	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10835090	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10835091	0.95[ASN][1000 genomes]
rs10835092	0.86[ASN][1000 genomes]
rs11822375	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12275693	0.95[ASN][1000 genomes]
rs12279228	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12280405	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12281076	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12282845	0.86[ASN][1000 genomes]
rs12284935	0.86[ASN][1000 genomes]
rs12285735	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12286240	0.86[ASN][1000 genomes]
rs12286282	0.86[ASN][1000 genomes]
rs12293478	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12421183	0.95[ASN][1000 genomes]
rs12576182	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12577937	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12578018	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1445333	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34681631	0.98[ASN][1000 genomes]
rs36102095	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59417854	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59654892	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106676	0.86[ASN][1000 genomes]
rs7107282	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7111860	0.95[ASN][1000 genomes]
rs7125909	0.86[ASN][1000 genomes]
rs7940518	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs959042	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs959043	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs959044	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv897146	chr11:26913936-27019331	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv949332	chr11:26935972-27223492	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv897147	chr11:26983363-27258899	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26993200-26994200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26993200-26996600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr11:26993600-26994200	Enhancers	NHDF-Ad	bronchial
4	chr11:26993800-26994200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:26993800-26994600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:26993800-26995600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:26994000-26994200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:26994000-26994200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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