Variant report

Variant	rs10835087
Chromosome Location	chr11:26997918-26997919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10835088	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10835090	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10835091	0.85[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs10835092	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs11822375	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12275693	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs12279228	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12280405	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12281076	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12282845	0.84[ASN][1000 genomes]
rs12284935	0.84[ASN][1000 genomes]
rs12285735	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12286240	0.84[ASN][1000 genomes]
rs12286282	0.84[ASN][1000 genomes]
rs12293478	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12421183	0.85[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs12576182	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12577937	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12578018	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1445333	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34681631	1.00[ASN][1000 genomes]
rs36102095	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59417854	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59447780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59654892	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7106676	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs7107282	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7111860	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs7125909	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs7940518	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs959042	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs959043	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs959044	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv897146	chr11:26913936-27019331	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv949332	chr11:26935972-27223492	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv897147	chr11:26983363-27258899	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26995200-26998000	Enhancers	Colon Smooth Muscle	Colon
2	chr11:26995200-26998200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:26996200-26998000	Weak transcription	HSMMtube	muscle
4	chr11:26996400-26998000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:26997200-26998200	Enhancers	NHDF-Ad	bronchial
6	chr11:26997200-26998400	Enhancers	Fetal Stomach	stomach
7	chr11:26997200-26998400	Enhancers	Ovary	ovary
8	chr11:26997200-26998400	Enhancers	Rectal Smooth Muscle	rectum
9	chr11:26997200-26998400	Enhancers	NH-A	brain
10	chr11:26997400-26998000	Enhancers	Fetal Lung	lung
11	chr11:26997400-26998400	Enhancers	Osteobl	bone
12	chr11:26997600-26998200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:26997600-26998400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:26997800-26998000	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr11:26997800-26998200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:26997800-26998200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr11:26997800-26998400	Enhancers	Stomach Smooth Muscle	stomach
18	chr11:26997800-26998400	Active TSS	A549	lung

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