Variant report

Variant	rs59763013
Chromosome Location	chr11:17013238-17013239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17002569..17005587-chr11:17010572..17013703,3	K562	blood:
2	chr11:17012963..17015420-chr11:17035840..17037615,2	MCF-7	breast:
3	chr11:17010780..17015542-chr11:17031310..17035315,5	MCF-7	breast:
4	chr11:17012348..17014489-chr11:17025477..17027730,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166689	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1059640	0.89[AMR][1000 genomes]
rs12281206	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294528	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55853906	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57681321	0.89[AMR][1000 genomes]
rs7126283	0.89[AMR][1000 genomes]
rs7928860	0.89[AMR][1000 genomes]
rs7939949	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17004800-17034200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:17006400-17013400	Weak transcription	Fetal Stomach	stomach
3	chr11:17006400-17034000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:17007000-17014200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:17008200-17014600	Weak transcription	Fetal Lung	lung
6	chr11:17008400-17016000	Weak transcription	Thymus	Thymus
7	chr11:17009200-17015000	Weak transcription	Adipose Nuclei	Adipose
8	chr11:17009400-17014600	Weak transcription	Small Intestine	intestine
9	chr11:17009400-17015800	Weak transcription	Left Ventricle	heart
10	chr11:17009400-17032600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:17009600-17017600	Weak transcription	Ovary	ovary
12	chr11:17009800-17013400	Weak transcription	Brain Anterior Caudate	brain
13	chr11:17009800-17018000	Weak transcription	Spleen	Spleen
14	chr11:17009800-17018800	Weak transcription	A549	lung
15	chr11:17009800-17030000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:17009800-17032600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:17009800-17032600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:17010000-17014400	Weak transcription	Liver	Liver
19	chr11:17010000-17014400	Weak transcription	Fetal Kidney	kidney
20	chr11:17010000-17015600	Weak transcription	Colonic Mucosa	Colon
21	chr11:17010000-17015800	Weak transcription	Lung	lung
22	chr11:17010000-17019000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:17010000-17023000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:17010400-17014200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:17011400-17014000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:17011600-17013400	Weak transcription	Fetal Heart	heart
27	chr11:17011600-17013800	Strong transcription	Fetal Intestine Large	intestine
28	chr11:17011600-17014600	Weak transcription	Right Ventricle	heart
29	chr11:17011600-17015600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:17011800-17014600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr11:17012200-17013600	Strong transcription	Duodenum Mucosa	Duodenum
32	chr11:17012200-17014200	Strong transcription	HepG2	liver
33	chr11:17012200-17015000	Weak transcription	Gastric	stomach
34	chr11:17012400-17013400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:17012400-17013800	Weak transcription	Pancreas	Pancrea
36	chr11:17012400-17014200	Strong transcription	Fetal Intestine Small	intestine
37	chr11:17012400-17024200	Enhancers	Stomach Mucosa	stomach
38	chr11:17012600-17017000	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:17013000-17013400	Enhancers	Brain Substantia Nigra	brain
40	chr11:17013000-17013800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:17013000-17014000	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr11:17013000-17014600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:17013200-17013400	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr11:17013200-17013800	Strong transcription	Esophagus	oesophagus
45	chr11:17013200-17013800	Enhancers	Right Atrium	heart

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