Variant report

Variant	rs59763849
Chromosome Location	chr19:39990636-39990637
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000090924	Chromatin interaction
ENSG00000176401	Chromatin interaction
ENSG00000269792	Chromatin interaction
ENSG00000105197	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11881791	0.87[AFR][1000 genomes]
rs55977867	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73930737	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911689	chr19:39903088-40021759	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv911690	chr19:39903088-40046863	Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv523856	chr19:39913558-39997472	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv911691	chr19:39979966-40029386	Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv911692	chr19:39979966-40046863	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv1060251	chr19:39982988-40099773	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
7	nsv911693	chr19:39986241-40033574	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39988600-39990800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
2	chr19:39989000-39990800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr19:39989000-39990800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr19:39989400-39990800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr19:39989400-39997600	Weak transcription	Right Atrium	heart
6	chr19:39989800-39990800	Enhancers	Fetal Brain Male	brain
7	chr19:39989800-39992000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr19:39989800-39993200	Weak transcription	K562	blood
9	chr19:39990000-39990800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
10	chr19:39990200-39991000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr19:39990200-39993200	Weak transcription	Pancreas	Pancrea
12	chr19:39990200-39997600	Weak transcription	Gastric	stomach
13	chr19:39990400-39990800	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
14	chr19:39990400-39990800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr19:39990600-39990800	Flanking Active TSS	Fetal Brain Female	brain
16	chr19:39990600-39990800	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
17	chr19:39990600-39991400	Flanking Active TSS	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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