Variant report

Variant	rs59770170
Chromosome Location	chr15:82238276-82238277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1018021	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16973224	0.89[AFR][1000 genomes]
rs60636752	1.00[AMR][1000 genomes]
rs73447458	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73447463	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73447475	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427964	chr15:81941520-82293593	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv523340	chr15:82157555-82265101	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1042198	chr15:82193633-82253240	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82212800-82250200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:82232400-82240800	Enhancers	Primary hematopoietic stem cells	blood
3	chr15:82232600-82241400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr15:82234200-82239400	Weak transcription	Osteobl	bone
5	chr15:82234400-82239400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr15:82234400-82243400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:82234400-82248200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:82235200-82239200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:82235200-82242000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:82236000-82239600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:82236000-82242600	Weak transcription	Fetal Heart	heart
12	chr15:82237400-82261400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:82237600-82243400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:82237600-82243600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:82237800-82238400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:82237800-82239400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr15:82237800-82240000	Enhancers	K562	blood
18	chr15:82237800-82241200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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