Variant report

Variant	rs16973224
Chromosome Location	chr15:82229656-82229657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12324262	1.00[EUR][1000 genomes]
rs17259219	0.87[EUR][1000 genomes]
rs17350184	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59770170	0.89[AFR][1000 genomes]
rs60147733	0.84[EUR][1000 genomes]
rs73447463	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427964	chr15:81941520-82293593	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv523340	chr15:82157555-82265101	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1042198	chr15:82193633-82253240	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82201400-82237600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:82212800-82250200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:82224200-82234000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:82229000-82230800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:82229400-82230000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:82229400-82230800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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