Variant report

Variant	rs17259219
Chromosome Location	chr15:82243056-82243057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:82241901..82243671-chr15:82245007..82247305,2	MCF-7	breast:
2	chr15:82241216..82245884-chr15:82337184..82340597,5	MCF-7	breast:
3	chr15:82241515..82243937-chr15:82249582..82251974,2	MCF-7	breast:
4	chr15:82242312..82245039-chr15:82250138..82252668,2	K562	blood:

Variant related genes	Relation type
ENSG00000183496	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12324262	0.87[EUR][1000 genomes]
rs16973224	0.87[EUR][1000 genomes]
rs17350184	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427964	chr15:81941520-82293593	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv523340	chr15:82157555-82265101	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1042198	chr15:82193633-82253240	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82212800-82250200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:82234400-82243400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr15:82234400-82248200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:82237400-82261400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:82237600-82243400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:82237600-82243600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr15:82238600-82243600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:82240400-82243200	Enhancers	K562	blood
9	chr15:82240400-82243400	Weak transcription	NH-A	brain
10	chr15:82241000-82243400	Weak transcription	Ovary	ovary
11	chr15:82241200-82243400	Weak transcription	Aorta	Aorta
12	chr15:82241800-82244000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:82242000-82243200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:82242600-82244000	Enhancers	Fetal Heart	heart
15	chr15:82242600-82244000	Enhancers	HSMM	muscle
16	chr15:82242600-82244000	Enhancers	HSMMtube	muscle
17	chr15:82242800-82243200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:82242800-82244000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:82243000-82243800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:82243000-82244000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr15:82243000-82244000	Enhancers	Osteobl	bone

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