Variant report

Variant	rs17350184
Chromosome Location	chr15:82235450-82235451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12324262	1.00[EUR][1000 genomes]
rs16973224	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17259219	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs60147733	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427964	chr15:81941520-82293593	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv523340	chr15:82157555-82265101	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1042198	chr15:82193633-82253240	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82201400-82237600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:82212800-82250200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:82232400-82240800	Enhancers	Primary hematopoietic stem cells	blood
4	chr15:82232600-82241400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr15:82234200-82239400	Weak transcription	Osteobl	bone
6	chr15:82234400-82239400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:82234400-82243400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:82234400-82248200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:82234600-82237200	Enhancers	K562	blood
10	chr15:82234600-82237400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:82234600-82237600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr15:82234800-82237400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:82235200-82239200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:82235200-82242000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:82235400-82236000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:82235400-82236000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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