Variant report

Variant	rs60147733
Chromosome Location	chr15:82207166-82207167
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:82199396..82202626-chr15:82203971..82207747,3	K562	blood:
2	chr15:82189826..82193574-chr15:82206652..82210207,4	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12324262	0.84[EUR][1000 genomes]
rs16973224	0.84[EUR][1000 genomes]
rs17350184	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758390	chr15:81941520-82224069	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2760045	chr15:81941520-82224069	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv427964	chr15:81941520-82293593	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv523340	chr15:82157555-82265101	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1042198	chr15:82193633-82253240	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82200400-82209000	Enhancers	Fetal Muscle Leg	muscle
2	chr15:82200400-82209000	Enhancers	Fetal Stomach	stomach
3	chr15:82201400-82207800	Enhancers	Fetal Muscle Trunk	muscle
4	chr15:82201400-82237600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:82202200-82207400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:82204800-82210800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:82205000-82208800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:82205200-82209800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:82205200-82210800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:82205400-82207600	Enhancers	Colon Smooth Muscle	Colon
11	chr15:82205800-82207600	Enhancers	Fetal Lung	lung
12	chr15:82205800-82207800	Enhancers	Left Ventricle	heart
13	chr15:82206000-82207200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr15:82206000-82207600	Enhancers	HSMM	muscle
15	chr15:82206200-82207400	Enhancers	Ovary	ovary
16	chr15:82206200-82207600	Enhancers	Placenta	Placenta
17	chr15:82206200-82207600	Enhancers	HSMMtube	muscle
18	chr15:82206200-82207800	Enhancers	Right Atrium	heart
19	chr15:82206400-82207600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr15:82206400-82207800	Enhancers	Adipose Nuclei	Adipose
21	chr15:82206600-82207400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
22	chr15:82206600-82207400	Enhancers	Right Ventricle	heart
23	chr15:82206600-82207600	Enhancers	Psoas Muscle	Psoas
24	chr15:82206600-82207800	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr15:82206600-82207800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr15:82206600-82208400	Enhancers	Liver	Liver
27	chr15:82206800-82207200	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr15:82206800-82207800	Enhancers	Fetal Heart	heart
29	chr15:82207000-82207400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:82207000-82207600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:82207000-82208200	Enhancers	Spleen	Spleen

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