Variant report
Variant | rs59771874 |
---|---|
Chromosome Location | chr3:54329270-54329271 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs3934631 | 0.88[AFR][1000 genomes] |
rs55719584 | 0.83[EUR][1000 genomes] |
rs56034762 | 0.91[AFR][1000 genomes] |
rs56208940 | 0.84[EUR][1000 genomes] |
rs56271940 | 0.88[AFR][1000 genomes] |
rs56362821 | 0.88[AFR][1000 genomes] |
rs57836319 | 0.88[AFR][1000 genomes] |
rs57945354 | 0.85[AFR][1000 genomes] |
rs58682581 | 0.83[EUR][1000 genomes] |
rs58976292 | 0.85[AFR][1000 genomes] |
rs59461034 | 0.85[AFR][1000 genomes] |
rs59804205 | 0.87[AFR][1000 genomes] |
rs59804657 | 0.85[AFR][1000 genomes] |
rs59965289 | 0.83[EUR][1000 genomes] |
rs61200778 | 0.88[AFR][1000 genomes] |
rs61444952 | 0.85[AFR][1000 genomes] |
rs6445639 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6445641 | 0.88[AFR][1000 genomes] |
rs6445643 | 0.88[AFR][1000 genomes] |
rs6769501 | 0.84[EUR][1000 genomes] |
rs73081630 | 0.85[EUR][1000 genomes] |
rs7427601 | 0.88[AFR][1000 genomes] |
rs7428712 | 0.87[AFR][1000 genomes] |
rs7430091 | 0.87[AFR][1000 genomes] |
rs7432978 | 0.88[AFR][1000 genomes] |
rs7434171 | 0.87[AFR][1000 genomes] |
rs7626696 | 0.84[EUR][1000 genomes] |
rs7649860 | 0.88[AFR][1000 genomes] |
rs9714322 | 0.85[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1003621 | chr3:53448934-54425322 | Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
2 | nsv1014595 | chr3:53944473-54846754 | Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv1014157 | chr3:54168755-54332321 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv817328 | chr3:54250314-54380438 | Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv876806 | chr3:54256648-54330010 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:54328600-54331000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
2 | chr3:54328800-54330800 | Weak transcription | H9 Cell Line | embryonic stem cell |