Variant report

Variant	rs59800435
Chromosome Location	chr6:106622501-106622502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:106602703..106605066-chr6:106622142..106624614,2	MCF-7	breast:
2	chr6:106616343..106618346-chr6:106620512..106623483,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12110796	0.83[EUR][1000 genomes]
rs12664702	0.83[EUR][1000 genomes]
rs2299861	0.83[EUR][1000 genomes]
rs2791119	0.83[EUR][1000 genomes]
rs478310	0.83[EUR][1000 genomes]
rs501804	0.83[EUR][1000 genomes]
rs511472	0.83[EUR][1000 genomes]
rs520296	0.83[EUR][1000 genomes]
rs538557	0.83[EUR][1000 genomes]
rs57050291	0.83[EUR][1000 genomes]
rs600076	0.83[EUR][1000 genomes]
rs605457	0.83[EUR][1000 genomes]
rs627484	0.83[EUR][1000 genomes]
rs632686	0.83[EUR][1000 genomes]
rs656994	0.83[EUR][1000 genomes]
rs672070	0.83[EUR][1000 genomes]
rs676090	0.83[EUR][1000 genomes]
rs676640	0.83[EUR][1000 genomes]
rs710088	0.83[EUR][1000 genomes]
rs710089	0.83[EUR][1000 genomes]
rs710090	0.83[EUR][1000 genomes]
rs710091	0.83[EUR][1000 genomes]
rs9372119	0.83[EUR][1000 genomes]
rs9373838	0.83[EUR][1000 genomes]
rs9373840	0.83[EUR][1000 genomes]
rs9398076	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1025231	chr6:106451012-106634389	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv830755	chr6:106461705-106624202	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1025900	chr6:106529777-106898421	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1018270	chr6:106531658-106908606	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv538399	chr6:106531658-106908606	Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	esv1832544	chr6:106539914-106642993	Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1035110	chr6:106557281-106802212	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv538400	chr6:106557281-106802212	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv1022855	chr6:106570926-106802072	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
11	nsv538401	chr6:106570926-106802072	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv1019265	chr6:106587627-106727591	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv538402	chr6:106587627-106727591	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
15	nsv1025963	chr6:106593639-106848778	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
16	nsv1020047	chr6:106597828-106912047	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
17	esv3444016	chr6:106620859-106624057	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106612400-106628200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:106612400-106662000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:106613200-106633400	Weak transcription	Primary B cells from cord blood	blood
4	chr6:106614200-106629800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:106616200-106629800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:106616400-106654200	Weak transcription	Aorta	Aorta
7	chr6:106617000-106629400	Weak transcription	HSMM	muscle
8	chr6:106621400-106626200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:106621600-106626600	Weak transcription	GM12878-XiMat	blood
10	chr6:106621800-106625400	Weak transcription	Small Intestine	intestine
11	chr6:106622000-106622800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:106622000-106624400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:106622000-106626200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:106622000-106626400	Weak transcription	Dnd41	blood
15	chr6:106622200-106624800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:106622200-106626000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:106622200-106626000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:106622200-106626200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:106622200-106626600	Weak transcription	Primary T cells from cord blood	blood
20	chr6:106622200-106626600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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