Variant report

Variant	rs59800874
Chromosome Location	chr6:37528458-37528459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37520797..37523091-chr6:37527184..37529081,2	K562	blood:
2	chr6:37451717..37452657-chr6:37527940..37528848,3	K562	blood:
3	chr6:37463721..37466572-chr6:37527557..37531360,4	K562	blood:
4	chr6:37527326..37529489-chr6:37534406..37536538,2	K562	blood:
5	chr6:37526579..37529682-chr6:37532707..37536538,3	K562	blood:
6	chr6:37448012..37449708-chr6:37526541..37528719,2	MCF-7	breast:
7	chr6:37463748..37465363-chr6:37527578..37530048,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL353597.1-4	chr6:37526836-37529409	NONHSAT112273

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55653411	1.00[AMR][1000 genomes]
rs55701851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6457999	1.00[AMR][1000 genomes]
rs6458000	1.00[AMR][1000 genomes]
rs6935772	1.00[AMR][1000 genomes]
rs73730792	1.00[AMR][1000 genomes]
rs73730794	1.00[AMR][1000 genomes]
rs73730795	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv1006017	chr6:37516345-37530226	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37504400-37529200	Weak transcription	Right Atrium	heart
2	chr6:37510800-37533800	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:37521200-37533800	Enhancers	Primary B cells from cord blood	blood
4	chr6:37522200-37533600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:37524400-37528600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:37524600-37529200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:37526200-37530200	Enhancers	Thymus	Thymus
8	chr6:37526600-37528800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:37526600-37532000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:37526800-37528600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr6:37526800-37528600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr6:37526800-37528800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:37527000-37528600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr6:37527200-37528800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:37527400-37528600	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr6:37527400-37528800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:37527600-37528800	Active TSS	Brain Anterior Caudate	brain
18	chr6:37527800-37528600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:37527800-37528600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chr6:37527800-37528600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr6:37528000-37528600	Active TSS	Brain Cingulate Gyrus	brain
22	chr6:37528000-37528800	Active TSS	Brain Angular Gyrus	brain
23	chr6:37528000-37530600	Enhancers	Fetal Thymus	thymus
24	chr6:37528200-37528800	Active TSS	Brain Hippocampus Middle	brain
25	chr6:37528200-37529200	Enhancers	Fetal Brain Female	brain
26	chr6:37528200-37529800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:37528200-37531600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:37528200-37533000	Enhancers	Brain Germinal Matrix	brain
29	chr6:37528400-37528600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:37528400-37528600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
31	chr6:37528400-37528600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:37528400-37528600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
33	chr6:37528400-37528600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
34	chr6:37528400-37528600	Flanking Bivalent TSS/Enh	K562	blood
35	chr6:37528400-37528600	Bivalent Enhancer	NHLF	lung
36	chr6:37528400-37528800	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:37528400-37528800	Flanking Active TSS	Brain Substantia Nigra	brain
38	chr6:37528400-37528800	Flanking Active TSS	Fetal Brain Male	brain
39	chr6:37528400-37529200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:37528400-37529400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:37528400-37530000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr6:37528400-37531800	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr6:37528400-37532400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr6:37528400-37533400	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr6:37528400-37533600	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr6:37528400-37533800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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