Variant report

Variant	rs6458000
Chromosome Location	chr6:37535661-37535662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55653411	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55701851	1.00[AMR][1000 genomes]
rs59800874	1.00[AMR][1000 genomes]
rs6457999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6935772	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73730791	0.86[AFR][1000 genomes]
rs73730792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73730794	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73730795	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv522098	chr6:37532103-37545923	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv522466	chr6:37532103-37545923	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37534200-37535800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:37534200-37537200	Weak transcription	Ovary	ovary
3	chr6:37534200-37537600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:37534200-37556600	Weak transcription	Right Atrium	heart
5	chr6:37534400-37536000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:37534400-37537400	Weak transcription	Primary B cells from cord blood	blood
7	chr6:37534600-37535800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:37534600-37537600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:37534800-37536800	Weak transcription	Fetal Brain Female	brain
10	chr6:37535200-37537600	Weak transcription	Brain Germinal Matrix	brain
11	chr6:37535400-37536000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:37535600-37535800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr6:37535600-37537400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:37535600-37537400	Weak transcription	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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