Variant report

Variant	rs59803362
Chromosome Location	chr9:101654236-101654237
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56312628	1.00[AMR][1000 genomes]
rs57886906	1.00[AMR][1000 genomes]
rs61216375	1.00[AMR][1000 genomes]
rs61706506	1.00[AMR][1000 genomes]
rs7035622	1.00[AMR][1000 genomes]
rs7037347	1.00[AMR][1000 genomes]
rs73653623	1.00[AMR][1000 genomes]
rs7857097	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101653000-101654400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:101653000-101655200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr9:101653000-101655400	Weak transcription	Fetal Heart	heart
4	chr9:101653000-101656200	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:101653000-101657400	Weak transcription	Left Ventricle	heart
6	chr9:101653000-101661600	Weak transcription	Adipose Nuclei	Adipose
7	chr9:101653200-101656000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:101653200-101656600	Weak transcription	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links