Variant report

Variant	rs61706506
Chromosome Location	chr9:101669146-101669147
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101669020..101671029-chr9:101685257..101688133,2	K562	blood:
2	chr9:101668380..101671265-chr9:101674389..101677093,5	K562	blood:
3	chr9:101663133..101664841-chr9:101667991..101670360,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56312628	1.00[AMR][1000 genomes]
rs59803362	1.00[AMR][1000 genomes]
rs61216375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7035622	1.00[AMR][1000 genomes]
rs7037347	1.00[AMR][1000 genomes]
rs73653623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7857097	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101662200-101670600	Weak transcription	Hela-S3	cervix
2	chr9:101662400-101670400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr9:101665800-101675600	Enhancers	Fetal Muscle Leg	muscle
4	chr9:101666200-101671400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr9:101667000-101670000	Enhancers	K562	blood
6	chr9:101667400-101670000	Enhancers	Fetal Intestine Small	intestine
7	chr9:101667400-101672800	Enhancers	HSMMtube	muscle
8	chr9:101667600-101671000	Enhancers	Fetal Intestine Large	intestine
9	chr9:101668400-101669600	Enhancers	Pancreas	Pancrea
10	chr9:101668400-101670800	Enhancers	HSMM	muscle
11	chr9:101668400-101673400	Enhancers	Adipose Nuclei	Adipose
12	chr9:101668600-101670800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:101668600-101670800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:101668600-101671800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:101668600-101671800	Enhancers	Fetal Lung	lung
16	chr9:101668600-101672200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:101668600-101672200	Enhancers	Osteobl	bone
18	chr9:101668600-101672400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr9:101668600-101672600	Enhancers	NHDF-Ad	bronchial
20	chr9:101668600-101672600	Enhancers	NHLF	lung
21	chr9:101668600-101672800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:101668800-101669200	Enhancers	Brain Hippocampus Middle	brain
23	chr9:101668800-101669200	Enhancers	Duodenum Mucosa	Duodenum
24	chr9:101668800-101669200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
25	chr9:101668800-101669400	Enhancers	Left Ventricle	heart
26	chr9:101668800-101669400	Enhancers	Lung	lung
27	chr9:101668800-101669400	Enhancers	Psoas Muscle	Psoas
28	chr9:101668800-101669400	Enhancers	Right Atrium	heart
29	chr9:101668800-101669400	Enhancers	Right Ventricle	heart
30	chr9:101668800-101669400	Enhancers	Small Intestine	intestine
31	chr9:101668800-101669600	Enhancers	Fetal Muscle Trunk	muscle
32	chr9:101668800-101669800	Enhancers	Placenta Amnion	Placenta Amnion
33	chr9:101668800-101669800	Enhancers	NH-A	brain
34	chr9:101668800-101670200	Enhancers	Fetal Heart	heart
35	chr9:101668800-101670800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:101668800-101671400	Enhancers	Placenta	Placenta
37	chr9:101668800-101671400	Enhancers	Ovary	ovary
38	chr9:101668800-101671400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr9:101668800-101671800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr9:101668800-101671800	Enhancers	Fetal Stomach	stomach
41	chr9:101668800-101672600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr9:101668800-101672600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:101669000-101669200	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr9:101669000-101669200	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links