Variant report

Variant	rs59822825
Chromosome Location	chr3:110132311-110132312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:110127793..110130696-chr3:110131755..110134003,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16856690	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16856946	0.83[EUR][1000 genomes]
rs58500543	0.83[EUR][1000 genomes]
rs62269411	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62269412	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62269414	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62269426	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62269437	0.94[EUR][1000 genomes]
rs62269438	0.94[EUR][1000 genomes]
rs62269439	0.94[EUR][1000 genomes]
rs62271576	0.83[EUR][1000 genomes]
rs62271586	0.83[EUR][1000 genomes]
rs62271587	0.83[EUR][1000 genomes]
rs62271588	0.83[EUR][1000 genomes]
rs62271591	0.83[EUR][1000 genomes]
rs62271592	0.83[EUR][1000 genomes]
rs6784411	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6784648	0.83[EUR][1000 genomes]
rs7628733	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460818	chr3:110007205-110155824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591272	chr3:110007205-110155824	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829669	chr3:110022724-110188397	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv460819	chr3:110080893-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877336	chr3:110083045-110143891	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv470838	chr3:110083045-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv591273	chr3:110087264-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv877337	chr3:110091627-110186611	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110130200-110134800	Enhancers	NHDF-Ad	bronchial
2	chr3:110131400-110135000	Enhancers	HUVEC	blood vessel
3	chr3:110131800-110134800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:110132000-110133000	Enhancers	Osteobl	bone
5	chr3:110132000-110134400	Enhancers	HMEC	breast
6	chr3:110132200-110132400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:110132200-110132400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:110132200-110132400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:110132200-110132400	Enhancers	Ovary	ovary
10	chr3:110132200-110132400	Enhancers	NH-A	brain
11	chr3:110132200-110132600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:110132200-110132600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:110132200-110132600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr3:110132200-110132600	Enhancers	Aorta	Aorta
15	chr3:110132200-110132600	Enhancers	A549	lung
16	chr3:110132200-110132600	Enhancers	HSMMtube	muscle
17	chr3:110132200-110133000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:110132200-110133200	Enhancers	Adipose Nuclei	Adipose
19	chr3:110132200-110134400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr3:110132200-110134400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:110132200-110134400	Enhancers	Liver	Liver
22	chr3:110132200-110134400	Enhancers	Hela-S3	cervix
23	chr3:110132200-110134400	Enhancers	NHLF	lung
24	chr3:110132200-110134800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:110132200-110134800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:110132200-110134800	Enhancers	HSMM	muscle
27	chr3:110132200-110134800	Enhancers	NHEK	skin

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