Variant report

Variant	rs58500543
Chromosome Location	chr3:110185649-110185650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1022229	0.86[ASN][1000 genomes]
rs11715486	0.91[ASN][1000 genomes]
rs12054102	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12633463	0.92[ASN][1000 genomes]
rs12637928	0.86[ASN][1000 genomes]
rs13058952	0.92[ASN][1000 genomes]
rs13081130	0.90[ASN][1000 genomes]
rs13093393	0.89[ASN][1000 genomes]
rs1398410	0.83[ASN][1000 genomes]
rs1512662	0.84[EUR][1000 genomes]
rs1512681	0.83[ASN][1000 genomes]
rs1606350	0.84[EUR][1000 genomes]
rs16856690	0.83[EUR][1000 genomes]
rs16856946	1.00[EUR][1000 genomes]
rs17727387	0.92[ASN][1000 genomes]
rs2055968	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2063567	0.84[ASN][1000 genomes]
rs2203187	0.86[ASN][1000 genomes]
rs2895375	0.84[EUR][1000 genomes]
rs34998073	0.92[ASN][1000 genomes]
rs35156093	0.89[ASN][1000 genomes]
rs4682589	0.87[ASN][1000 genomes]
rs4682590	0.89[ASN][1000 genomes]
rs57680282	0.89[EUR][1000 genomes]
rs59612531	0.83[EUR][1000 genomes]
rs59822825	0.83[EUR][1000 genomes]
rs59985710	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62269411	0.83[EUR][1000 genomes]
rs62269412	0.83[EUR][1000 genomes]
rs62269414	0.83[EUR][1000 genomes]
rs62269437	0.89[EUR][1000 genomes]
rs62269438	0.89[EUR][1000 genomes]
rs62269439	0.89[EUR][1000 genomes]
rs62270060	0.89[EUR][1000 genomes]
rs62270063	0.89[EUR][1000 genomes]
rs62270076	0.89[EUR][1000 genomes]
rs62270083	0.89[EUR][1000 genomes]
rs62270086	0.89[EUR][1000 genomes]
rs62270095	0.89[EUR][1000 genomes]
rs62270100	0.89[EUR][1000 genomes]
rs62271562	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62271576	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62271578	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271586	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271587	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271588	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62271591	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62271592	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62271606	0.89[EUR][1000 genomes]
rs62271607	0.89[EUR][1000 genomes]
rs62271608	0.89[EUR][1000 genomes]
rs62271609	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62271610	0.89[EUR][1000 genomes]
rs62271612	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62271615	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62271616	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62271618	0.89[EUR][1000 genomes]
rs62271620	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62271621	0.89[EUR][1000 genomes]
rs62271636	0.89[EUR][1000 genomes]
rs62271639	0.89[EUR][1000 genomes]
rs62271642	0.89[EUR][1000 genomes]
rs62271644	0.89[EUR][1000 genomes]
rs62271647	0.89[EUR][1000 genomes]
rs6437914	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6765569	0.89[EUR][1000 genomes]
rs6771696	0.89[ASN][1000 genomes]
rs6781483	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6784411	0.83[EUR][1000 genomes]
rs6784648	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6788158	0.92[ASN][1000 genomes]
rs7617903	0.95[EUR][1000 genomes]
rs7628733	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7631316	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7634524	0.89[EUR][1000 genomes]
rs963346	0.86[ASN][1000 genomes]
rs9653909	0.89[EUR][1000 genomes]
rs9809312	0.84[EUR][1000 genomes]
rs9818091	0.86[ASN][1000 genomes]
rs9862336	0.84[ASN][1000 genomes]
rs9870835	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829669	chr3:110022724-110188397	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv460819	chr3:110080893-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv470838	chr3:110083045-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv591273	chr3:110087264-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877337	chr3:110091627-110186611	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110184800-110185800	Enhancers	NHDF-Ad	bronchial
2	chr3:110185600-110185800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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