Variant report

Variant	rs6788158
Chromosome Location	chr3:110196512-110196513
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:110195963..110198828-chr3:110223194..110225023,2	K562	blood:
2	chr3:110186109..110188840-chr3:110194422..110197001,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1022229	0.93[ASN][1000 genomes]
rs1028026	0.81[ASN][1000 genomes]
rs1028027	0.81[ASN][1000 genomes]
rs10511286	0.91[EUR][1000 genomes]
rs11713405	0.91[EUR][1000 genomes]
rs11715486	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11719761	0.84[EUR][1000 genomes]
rs11721302	0.91[EUR][1000 genomes]
rs12487462	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs12633463	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12633668	0.88[EUR][1000 genomes]
rs12637928	0.93[ASN][1000 genomes]
rs12638763	0.91[EUR][1000 genomes]
rs13058952	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062461	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13065612	0.91[EUR][1000 genomes]
rs13069621	0.91[EUR][1000 genomes]
rs13070606	0.90[EUR][1000 genomes]
rs13078633	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[EUR][1000 genomes]
rs13081130	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13093393	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1398354	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1398410	0.90[ASN][1000 genomes]
rs1512681	0.90[ASN][1000 genomes]
rs1533208	0.82[ASN][1000 genomes]
rs17202417	0.84[EUR][1000 genomes]
rs17727387	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1849379	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2055966	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs2063567	0.92[ASN][1000 genomes]
rs2203187	0.93[ASN][1000 genomes]
rs2399335	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs34998073	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35156093	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35372780	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35859521	0.91[EUR][1000 genomes]
rs4682179	0.84[EUR][1000 genomes]
rs4682180	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4682182	0.96[CEU][hapmap]
rs4682588	0.91[EUR][1000 genomes]
rs4682589	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4682590	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4682596	0.96[CEU][hapmap]
rs58500543	0.92[ASN][1000 genomes]
rs62271578	0.92[ASN][1000 genomes]
rs62271586	0.92[ASN][1000 genomes]
rs62271587	0.92[ASN][1000 genomes]
rs62271588	0.90[ASN][1000 genomes]
rs62271591	0.90[ASN][1000 genomes]
rs62271592	0.90[ASN][1000 genomes]
rs6437914	0.92[ASN][1000 genomes]
rs6771696	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6787448	0.91[EUR][1000 genomes]
rs7626514	0.81[EUR][1000 genomes]
rs7628733	0.90[ASN][1000 genomes]
rs7630242	0.82[EUR][1000 genomes]
rs7638452	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7640755	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs963346	0.93[ASN][1000 genomes]
rs9813893	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs9815868	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs9818091	0.93[ASN][1000 genomes]
rs9831873	0.84[EUR][1000 genomes]
rs9843950	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs9851821	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9862336	0.92[ASN][1000 genomes]
rs9870835	0.93[ASN][1000 genomes]
rs9872133	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9877235	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9877920	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110196400-110196600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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