Variant report

Variant	rs17202417
Chromosome Location	chr3:110267565-110267566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:110224350..110227035-chr3:110267483..110270332,2	K562	blood:

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs1022206	0.81[ASN][1000 genomes]
rs10934044	0.89[EUR][1000 genomes]
rs11708299	0.88[EUR][1000 genomes]
rs11712226	0.89[EUR][1000 genomes]
rs11715486	0.84[EUR][1000 genomes]
rs11717425	0.91[EUR][1000 genomes]
rs11719650	0.90[EUR][1000 genomes]
rs11719761	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719899	0.89[EUR][1000 genomes]
rs11923659	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12489421	0.81[ASN][1000 genomes]
rs12633463	0.84[EUR][1000 genomes]
rs13058952	0.84[EUR][1000 genomes]
rs13060335	0.88[EUR][1000 genomes]
rs13062461	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13073982	0.89[EUR][1000 genomes]
rs13078633	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13081130	0.84[EUR][1000 genomes]
rs13093393	0.84[EUR][1000 genomes]
rs13093864	0.89[EUR][1000 genomes]
rs13094824	0.89[EUR][1000 genomes]
rs13095342	0.89[EUR][1000 genomes]
rs1355627	0.82[ASN][1000 genomes]
rs1398340	0.82[ASN][1000 genomes]
rs1398342	0.82[ASN][1000 genomes]
rs1398355	0.82[ASN][1000 genomes]
rs1398357	0.82[ASN][1000 genomes]
rs1398358	0.82[ASN][1000 genomes]
rs1512512	0.82[ASN][1000 genomes]
rs1512662	0.89[ASN][1000 genomes]
rs1512663	0.90[EUR][1000 genomes]
rs1533189	0.89[EUR][1000 genomes]
rs1533190	0.89[EUR][1000 genomes]
rs1533191	0.89[EUR][1000 genomes]
rs17280915	0.89[EUR][1000 genomes]
rs17727387	0.84[EUR][1000 genomes]
rs1849379	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1858429	0.86[EUR][1000 genomes]
rs1877461	0.82[ASN][1000 genomes]
rs1913092	0.82[ASN][1000 genomes]
rs1913093	0.82[ASN][1000 genomes]
rs1913096	0.82[ASN][1000 genomes]
rs1913097	0.82[ASN][1000 genomes]
rs2089941	0.80[ASN][1000 genomes]
rs2089942	0.82[ASN][1000 genomes]
rs2399329	0.81[ASN][1000 genomes]
rs2399331	0.82[ASN][1000 genomes]
rs2895375	0.91[ASN][1000 genomes]
rs34877286	0.91[EUR][1000 genomes]
rs34998073	0.84[EUR][1000 genomes]
rs35156093	0.84[EUR][1000 genomes]
rs35272097	0.89[EUR][1000 genomes]
rs36021113	0.87[EUR][1000 genomes]
rs36099671	0.89[EUR][1000 genomes]
rs3899903	0.82[ASN][1000 genomes]
rs4682009	0.82[ASN][1000 genomes]
rs4682010	0.82[ASN][1000 genomes]
rs4682011	0.82[ASN][1000 genomes]
rs4682178	0.89[EUR][1000 genomes]
rs4682179	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682180	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4682182	0.91[EUR][1000 genomes]
rs4682185	0.88[EUR][1000 genomes]
rs4682186	0.82[ASN][1000 genomes]
rs4682589	0.84[EUR][1000 genomes]
rs4682590	0.84[EUR][1000 genomes]
rs4682596	0.89[EUR][1000 genomes]
rs61302912	0.88[EUR][1000 genomes]
rs62270060	0.85[ASN][1000 genomes]
rs62271604	0.89[EUR][1000 genomes]
rs62271605	0.89[EUR][1000 genomes]
rs62271606	0.87[ASN][1000 genomes]
rs62271607	0.87[ASN][1000 genomes]
rs62271608	0.87[ASN][1000 genomes]
rs62271610	0.87[ASN][1000 genomes]
rs62271618	0.87[ASN][1000 genomes]
rs62271621	0.87[ASN][1000 genomes]
rs62271634	0.88[EUR][1000 genomes]
rs62271636	0.89[ASN][1000 genomes]
rs62271639	0.91[ASN][1000 genomes]
rs62271642	0.91[ASN][1000 genomes]
rs62271644	0.91[ASN][1000 genomes]
rs62271646	0.89[ASN][1000 genomes]
rs62271647	0.88[ASN][1000 genomes]
rs6437918	0.89[EUR][1000 genomes]
rs6765569	0.91[ASN][1000 genomes]
rs6768646	0.82[ASN][1000 genomes]
rs6768745	0.82[ASN][1000 genomes]
rs6771696	0.84[EUR][1000 genomes]
rs6778144	0.90[EUR][1000 genomes]
rs6781525	0.82[ASN][1000 genomes]
rs6781864	0.82[ASN][1000 genomes]
rs6788158	0.84[EUR][1000 genomes]
rs71323156	0.88[EUR][1000 genomes]
rs7620235	0.90[EUR][1000 genomes]
rs7621339	0.82[ASN][1000 genomes]
rs7626514	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7628651	0.82[ASN][1000 genomes]
rs7628857	0.89[EUR][1000 genomes]
rs7629756	0.89[EUR][1000 genomes]
rs7630242	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7634524	0.91[ASN][1000 genomes]
rs7638452	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7651780	0.91[EUR][1000 genomes]
rs949971	0.91[EUR][1000 genomes]
rs9809608	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9831873	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9872133	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9874430	0.82[ASN][1000 genomes]
rs9877235	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9877920	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv829672	chr3:110206693-110361632	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv2760771	chr3:110263131-110288760	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110261600-110269600	Weak transcription	K562	blood
2	chr3:110262000-110268000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links