Variant report

Variant	rs9877235
Chromosome Location	chr3:110264260-110264261
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 166 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs1028026	0.88[ASN][1000 genomes]
rs1028027	0.88[ASN][1000 genomes]
rs10934044	0.89[EUR][1000 genomes]
rs10934045	0.91[ASN][1000 genomes]
rs10934046	0.93[ASN][1000 genomes]
rs10934049	0.89[ASN][1000 genomes]
rs10934050	0.86[ASN][1000 genomes]
rs11708299	0.88[EUR][1000 genomes]
rs11712226	0.89[EUR][1000 genomes]
rs11715486	0.84[EUR][1000 genomes]
rs11717425	0.90[EUR][1000 genomes]
rs11719650	0.89[EUR][1000 genomes]
rs11719761	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11719899	0.88[EUR][1000 genomes]
rs11923659	0.88[EUR][1000 genomes]
rs12487462	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12493324	0.86[ASN][1000 genomes]
rs12633463	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13058952	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13060335	0.88[EUR][1000 genomes]
rs13062461	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13073982	0.89[EUR][1000 genomes]
rs13078633	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13081130	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13093393	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13093864	0.89[EUR][1000 genomes]
rs13094824	0.89[EUR][1000 genomes]
rs13095342	0.89[EUR][1000 genomes]
rs1398346	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1398347	0.92[ASN][1000 genomes]
rs1398348	0.93[ASN][1000 genomes]
rs1398349	0.93[ASN][1000 genomes]
rs1398354	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1398409	0.93[ASN][1000 genomes]
rs1512514	0.90[ASN][1000 genomes]
rs1512519	0.93[ASN][1000 genomes]
rs1512540	0.91[ASN][1000 genomes]
rs1512660	0.91[ASN][1000 genomes]
rs1512661	0.91[ASN][1000 genomes]
rs1512663	0.89[EUR][1000 genomes]
rs1533189	0.89[EUR][1000 genomes]
rs1533190	0.89[EUR][1000 genomes]
rs1533191	0.89[EUR][1000 genomes]
rs1574700	0.91[ASN][1000 genomes]
rs1606345	0.90[ASN][1000 genomes]
rs1606346	0.90[ASN][1000 genomes]
rs1606347	0.88[ASN][1000 genomes]
rs1606348	0.90[ASN][1000 genomes]
rs1606349	0.93[ASN][1000 genomes]
rs17202417	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17280915	0.89[EUR][1000 genomes]
rs17727387	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1849379	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1858429	0.86[EUR][1000 genomes]
rs1913088	0.91[ASN][1000 genomes]
rs1913100	0.93[ASN][1000 genomes]
rs2055966	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2055967	0.92[ASN][1000 genomes]
rs2055968	0.90[ASN][1000 genomes]
rs2399333	0.80[ASN][1000 genomes]
rs2399335	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2399336	0.93[ASN][1000 genomes]
rs2399337	0.90[ASN][1000 genomes]
rs34877286	0.90[EUR][1000 genomes]
rs34998073	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35156093	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35272097	0.90[EUR][1000 genomes]
rs36021113	0.87[EUR][1000 genomes]
rs36099671	0.89[EUR][1000 genomes]
rs4682178	0.89[EUR][1000 genomes]
rs4682179	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4682180	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682181	0.92[ASN][1000 genomes]
rs4682182	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs4682185	0.88[EUR][1000 genomes]
rs4682589	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4682590	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4682594	0.91[ASN][1000 genomes]
rs4682596	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs55782499	0.88[ASN][1000 genomes]
rs56067719	0.91[ASN][1000 genomes]
rs56396321	0.88[ASN][1000 genomes]
rs59985710	0.90[ASN][1000 genomes]
rs61302912	0.88[EUR][1000 genomes]
rs62271604	0.89[EUR][1000 genomes]
rs62271605	0.89[EUR][1000 genomes]
rs62271609	0.90[ASN][1000 genomes]
rs62271612	0.90[ASN][1000 genomes]
rs62271615	0.90[ASN][1000 genomes]
rs62271616	0.90[ASN][1000 genomes]
rs62271620	0.88[ASN][1000 genomes]
rs62271634	0.88[EUR][1000 genomes]
rs6437918	0.89[EUR][1000 genomes]
rs67064864	0.91[ASN][1000 genomes]
rs67166271	0.93[ASN][1000 genomes]
rs6771696	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6778144	0.89[EUR][1000 genomes]
rs6780070	0.88[ASN][1000 genomes]
rs6781483	0.90[ASN][1000 genomes]
rs6784648	0.87[ASN][1000 genomes]
rs6785576	0.88[ASN][1000 genomes]
rs6788158	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs71323156	0.87[EUR][1000 genomes]
rs73217304	0.93[ASN][1000 genomes]
rs73217311	0.92[ASN][1000 genomes]
rs73217315	0.92[ASN][1000 genomes]
rs7613348	0.91[ASN][1000 genomes]
rs7616260	0.93[ASN][1000 genomes]
rs7620235	0.89[EUR][1000 genomes]
rs7623008	0.88[ASN][1000 genomes]
rs7626511	0.88[ASN][1000 genomes]
rs7626514	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7626602	0.85[ASN][1000 genomes]
rs7627828	0.93[ASN][1000 genomes]
rs7628857	0.88[EUR][1000 genomes]
rs7629756	0.89[EUR][1000 genomes]
rs7630242	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7631316	0.90[ASN][1000 genomes]
rs7638452	0.84[EUR][1000 genomes]
rs7638870	0.90[ASN][1000 genomes]
rs7640587	0.91[ASN][1000 genomes]
rs7640755	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7640794	0.90[ASN][1000 genomes]
rs7644836	0.92[ASN][1000 genomes]
rs7648338	0.87[ASN][1000 genomes]
rs7648726	0.89[ASN][1000 genomes]
rs7651780	0.90[EUR][1000 genomes]
rs7652124	0.90[ASN][1000 genomes]
rs949970	0.90[ASN][1000 genomes]
rs949971	0.90[EUR][1000 genomes]
rs9809100	0.90[ASN][1000 genomes]
rs9809608	0.82[EUR][1000 genomes]
rs9813893	0.85[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs9814176	0.90[ASN][1000 genomes]
rs9815066	0.90[ASN][1000 genomes]
rs9815868	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9816249	0.90[ASN][1000 genomes]
rs9820458	0.90[ASN][1000 genomes]
rs9821761	0.89[ASN][1000 genomes]
rs9826577	0.91[ASN][1000 genomes]
rs9831873	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9839635	0.92[ASN][1000 genomes]
rs9843950	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9846566	0.91[ASN][1000 genomes]
rs9847279	0.92[ASN][1000 genomes]
rs9855219	0.86[ASN][1000 genomes]
rs9860708	0.91[ASN][1000 genomes]
rs9867550	0.91[ASN][1000 genomes]
rs9872133	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9872620	0.93[ASN][1000 genomes]
rs9877123	0.90[ASN][1000 genomes]
rs9877354	0.90[ASN][1000 genomes]
rs9877472	0.91[ASN][1000 genomes]
rs9877920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv829672	chr3:110206693-110361632	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv2760771	chr3:110263131-110288760	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110261600-110269600	Weak transcription	K562	blood
2	chr3:110262000-110268000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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