Variant report

Variant	rs62271620
Chromosome Location	chr3:110240514-110240515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:110240019..110241918-chr3:110243471..110245418,2	K562	blood:
2	chr3:110222894..110225675-chr3:110240158..110242098,2	K562	blood:

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs1028026	0.81[ASN][1000 genomes]
rs1028027	0.81[ASN][1000 genomes]
rs10934045	0.84[ASN][1000 genomes]
rs10934046	0.82[ASN][1000 genomes]
rs10934063	0.89[EUR][1000 genomes]
rs10934064	0.89[EUR][1000 genomes]
rs12487462	0.82[ASN][1000 genomes]
rs13062461	0.85[ASN][1000 genomes]
rs1398346	0.88[ASN][1000 genomes]
rs1398347	0.81[ASN][1000 genomes]
rs1398348	0.82[ASN][1000 genomes]
rs1398349	0.82[ASN][1000 genomes]
rs1398354	0.82[ASN][1000 genomes]
rs1398409	0.82[ASN][1000 genomes]
rs1512514	0.80[ASN][1000 genomes]
rs1512519	0.82[ASN][1000 genomes]
rs1512540	0.84[ASN][1000 genomes]
rs1512660	0.84[ASN][1000 genomes]
rs1512661	0.84[ASN][1000 genomes]
rs1512662	0.95[EUR][1000 genomes]
rs1574700	0.84[ASN][1000 genomes]
rs1606345	0.81[ASN][1000 genomes]
rs1606346	0.81[ASN][1000 genomes]
rs1606348	0.81[ASN][1000 genomes]
rs1606349	0.82[ASN][1000 genomes]
rs1606350	0.95[EUR][1000 genomes]
rs16856946	0.89[EUR][1000 genomes]
rs1849379	0.90[ASN][1000 genomes]
rs1913088	0.84[ASN][1000 genomes]
rs1913100	0.82[ASN][1000 genomes]
rs2055966	0.81[ASN][1000 genomes]
rs2055967	0.81[ASN][1000 genomes]
rs2055968	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2399335	0.81[ASN][1000 genomes]
rs2399336	0.82[ASN][1000 genomes]
rs2399337	0.83[ASN][1000 genomes]
rs2895375	0.95[EUR][1000 genomes]
rs4682180	0.87[ASN][1000 genomes]
rs4682181	0.81[ASN][1000 genomes]
rs4682594	0.84[ASN][1000 genomes]
rs56067719	0.84[ASN][1000 genomes]
rs57198450	0.94[EUR][1000 genomes]
rs57680282	1.00[EUR][1000 genomes]
rs58500543	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59612531	0.94[EUR][1000 genomes]
rs59985710	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60302938	0.89[EUR][1000 genomes]
rs62270060	1.00[EUR][1000 genomes]
rs62270063	1.00[EUR][1000 genomes]
rs62270076	1.00[EUR][1000 genomes]
rs62270083	1.00[EUR][1000 genomes]
rs62270086	1.00[EUR][1000 genomes]
rs62270095	1.00[EUR][1000 genomes]
rs62270100	1.00[EUR][1000 genomes]
rs62270121	0.89[EUR][1000 genomes]
rs62270122	0.89[EUR][1000 genomes]
rs62270123	0.89[EUR][1000 genomes]
rs62270124	0.94[EUR][1000 genomes]
rs62270127	0.89[EUR][1000 genomes]
rs62270128	0.94[EUR][1000 genomes]
rs62270130	0.89[EUR][1000 genomes]
rs62270134	0.94[EUR][1000 genomes]
rs62271562	0.84[EUR][1000 genomes]
rs62271576	0.89[EUR][1000 genomes]
rs62271578	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62271586	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62271587	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62271588	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62271591	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62271592	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62271606	1.00[EUR][1000 genomes]
rs62271607	1.00[EUR][1000 genomes]
rs62271608	1.00[EUR][1000 genomes]
rs62271609	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62271610	1.00[EUR][1000 genomes]
rs62271612	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62271615	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62271616	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62271618	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62271621	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62271636	1.00[EUR][1000 genomes]
rs62271639	1.00[EUR][1000 genomes]
rs62271642	1.00[EUR][1000 genomes]
rs62271644	1.00[EUR][1000 genomes]
rs62271646	0.85[EUR][1000 genomes]
rs62271647	1.00[EUR][1000 genomes]
rs62271761	0.83[EUR][1000 genomes]
rs62271763	0.89[EUR][1000 genomes]
rs62271766	0.94[EUR][1000 genomes]
rs6437914	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs67064864	0.80[ASN][1000 genomes]
rs67166271	0.82[ASN][1000 genomes]
rs6765569	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6768474	0.81[EUR][1000 genomes]
rs6772035	0.89[EUR][1000 genomes]
rs6776067	0.89[EUR][1000 genomes]
rs6781483	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6784648	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73217304	0.82[ASN][1000 genomes]
rs73217311	0.81[ASN][1000 genomes]
rs73217315	0.81[ASN][1000 genomes]
rs7613348	0.84[ASN][1000 genomes]
rs7616260	0.82[ASN][1000 genomes]
rs7617903	0.84[EUR][1000 genomes]
rs7627828	0.82[ASN][1000 genomes]
rs7628733	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7631316	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7632974	0.89[EUR][1000 genomes]
rs7634524	1.00[EUR][1000 genomes]
rs7634536	0.84[EUR][1000 genomes]
rs7638870	0.81[ASN][1000 genomes]
rs7640587	0.84[ASN][1000 genomes]
rs7640755	0.81[ASN][1000 genomes]
rs7640794	0.84[ASN][1000 genomes]
rs7644836	0.81[ASN][1000 genomes]
rs7650722	0.89[EUR][1000 genomes]
rs7652062	0.81[EUR][1000 genomes]
rs7652124	0.81[ASN][1000 genomes]
rs949970	0.80[ASN][1000 genomes]
rs9653909	1.00[EUR][1000 genomes]
rs9809100	0.81[ASN][1000 genomes]
rs9809312	0.95[EUR][1000 genomes]
rs9813893	0.81[ASN][1000 genomes]
rs9814176	0.81[ASN][1000 genomes]
rs9815066	0.81[ASN][1000 genomes]
rs9815868	0.81[ASN][1000 genomes]
rs9816249	0.81[ASN][1000 genomes]
rs9820458	0.81[ASN][1000 genomes]
rs9825259	0.89[EUR][1000 genomes]
rs9826577	0.84[ASN][1000 genomes]
rs9831873	0.88[ASN][1000 genomes]
rs9839635	0.81[ASN][1000 genomes]
rs9843950	0.81[ASN][1000 genomes]
rs9846566	0.84[ASN][1000 genomes]
rs9847279	0.81[ASN][1000 genomes]
rs9858359	0.89[EUR][1000 genomes]
rs9860708	0.84[ASN][1000 genomes]
rs9867550	0.84[ASN][1000 genomes]
rs9872133	0.90[ASN][1000 genomes]
rs9872620	0.82[ASN][1000 genomes]
rs9873714	0.89[EUR][1000 genomes]
rs9877123	0.81[ASN][1000 genomes]
rs9877235	0.88[ASN][1000 genomes]
rs9877354	0.81[ASN][1000 genomes]
rs9877472	0.84[ASN][1000 genomes]
rs9877920	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv829672	chr3:110206693-110361632	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110232000-110245200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:110239400-110240600	Enhancers	NHDF-Ad	bronchial
3	chr3:110239400-110241000	Enhancers	NHLF	lung
4	chr3:110239400-110241400	Enhancers	HUVEC	blood vessel
5	chr3:110239600-110240600	Enhancers	NH-A	brain
6	chr3:110239600-110240600	Enhancers	Osteobl	bone
7	chr3:110239800-110240600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:110240000-110245400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:110240400-110240800	Enhancers	K562	blood
10	chr3:110240400-110245200	Weak transcription	HMEC	breast

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