Variant report

Variant	rs6768474
Chromosome Location	chr3:110382273-110382274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10934055	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10934056	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10934063	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10934064	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1156778	0.84[ASN][1000 genomes]
rs11925026	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12053901	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12493010	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1398352	0.87[ASN][1000 genomes]
rs1462294	0.80[ASN][1000 genomes]
rs1462295	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1462316	0.82[ASN][1000 genomes]
rs1473828	0.84[ASN][1000 genomes]
rs1512522	0.85[ASN][1000 genomes]
rs1512524	0.85[ASN][1000 genomes]
rs1512530	0.83[ASN][1000 genomes]
rs1512662	0.86[EUR][1000 genomes]
rs1547543	0.84[ASN][1000 genomes]
rs1599569	0.80[ASN][1000 genomes]
rs1606350	0.86[EUR][1000 genomes]
rs1824630	0.82[ASN][1000 genomes]
rs1903678	0.82[ASN][1000 genomes]
rs1913090	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1913091	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2055965	0.87[ASN][1000 genomes]
rs2055968	0.86[EUR][1000 genomes]
rs2199454	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs2399356	0.82[ASN][1000 genomes]
rs2895375	0.86[EUR][1000 genomes]
rs4234400	0.81[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4362750	0.85[ASN][1000 genomes]
rs4395426	0.84[ASN][1000 genomes]
rs4410465	0.84[ASN][1000 genomes]
rs4438690	0.82[ASN][1000 genomes]
rs4449350	0.84[ASN][1000 genomes]
rs4450854	0.84[ASN][1000 genomes]
rs4469006	0.84[ASN][1000 genomes]
rs4481181	0.84[ASN][1000 genomes]
rs4547734	0.83[ASN][1000 genomes]
rs4550849	0.82[ASN][1000 genomes]
rs4588395	0.84[ASN][1000 genomes]
rs4634158	0.83[ASN][1000 genomes]
rs4682014	0.84[ASN][1000 genomes]
rs4682017	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682018	0.84[ASN][1000 genomes]
rs4682192	0.84[ASN][1000 genomes]
rs4682193	0.84[ASN][1000 genomes]
rs4682194	0.84[ASN][1000 genomes]
rs4682195	0.84[ASN][1000 genomes]
rs4682198	0.84[ASN][1000 genomes]
rs55894328	0.81[ASN][1000 genomes]
rs57198450	0.83[AMR][1000 genomes]
rs57680282	0.81[EUR][1000 genomes]
rs59612531	0.83[AMR][1000 genomes]
rs59985710	0.81[EUR][1000 genomes]
rs60302938	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62270060	0.81[EUR][1000 genomes]
rs62270063	0.81[EUR][1000 genomes]
rs62270076	0.81[EUR][1000 genomes]
rs62270083	0.81[EUR][1000 genomes]
rs62270086	0.81[EUR][1000 genomes]
rs62270095	0.81[EUR][1000 genomes]
rs62270100	0.81[EUR][1000 genomes]
rs62270121	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62270122	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62270123	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62270124	0.83[AMR][1000 genomes]
rs62270127	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62270128	0.81[AMR][1000 genomes]
rs62270130	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62270134	0.83[AMR][1000 genomes]
rs62271606	0.81[EUR][1000 genomes]
rs62271607	0.81[EUR][1000 genomes]
rs62271608	0.81[EUR][1000 genomes]
rs62271609	0.81[EUR][1000 genomes]
rs62271610	0.81[EUR][1000 genomes]
rs62271612	0.81[EUR][1000 genomes]
rs62271615	0.81[EUR][1000 genomes]
rs62271616	0.81[EUR][1000 genomes]
rs62271618	0.81[EUR][1000 genomes]
rs62271620	0.81[EUR][1000 genomes]
rs62271621	0.81[EUR][1000 genomes]
rs62271636	0.81[EUR][1000 genomes]
rs62271639	0.81[EUR][1000 genomes]
rs62271642	0.81[EUR][1000 genomes]
rs62271644	0.81[EUR][1000 genomes]
rs62271647	0.81[EUR][1000 genomes]
rs62271763	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62271766	0.81[AMR][1000 genomes]
rs6765569	0.81[EUR][1000 genomes]
rs6772035	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6776067	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6781483	0.81[EUR][1000 genomes]
rs6784490	0.83[ASN][1000 genomes]
rs7615772	0.80[ASN][1000 genomes]
rs7631316	0.81[EUR][1000 genomes]
rs7632974	1.00[CEU][hapmap];0.80[CHB][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7634524	0.81[EUR][1000 genomes]
rs7634536	0.83[AMR][1000 genomes]
rs7637105	0.84[ASN][1000 genomes]
rs7650722	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7652062	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9653909	0.81[EUR][1000 genomes]
rs9681655	1.00[TSI][hapmap]
rs9809312	0.86[EUR][1000 genomes]
rs9825259	1.00[CEU][hapmap];0.80[CHB][hapmap];0.84[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9826294	0.83[ASN][1000 genomes]
rs9838550	0.84[ASN][1000 genomes]
rs9838611	0.84[ASN][1000 genomes]
rs9838715	0.84[ASN][1000 genomes]
rs9840671	0.84[ASN][1000 genomes]
rs9842924	0.82[ASN][1000 genomes]
rs9843528	0.84[ASN][1000 genomes]
rs9843978	0.84[ASN][1000 genomes]
rs9844791	0.84[ASN][1000 genomes]
rs9858359	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs986205	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs986206	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9863549	0.84[ASN][1000 genomes]
rs9873714	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9874241	0.85[ASN][1000 genomes]
rs9876058	0.84[ASN][1000 genomes]
rs9884058	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv829673	chr3:110378069-110530815	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110379000-110382600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:110381400-110384000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:110381800-110382800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:110381800-110389200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:110382200-110385200	Weak transcription	Fetal Intestine Small	intestine

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