Variant report

Variant	rs9809312
Chromosome Location	chr3:110319967-110319968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs1022206	0.85[ASN][1000 genomes]
rs10934056	0.82[EUR][1000 genomes]
rs10934063	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10934064	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11925026	0.84[EUR][1000 genomes]
rs12053901	0.84[EUR][1000 genomes]
rs12489421	0.87[ASN][1000 genomes]
rs12493010	0.82[EUR][1000 genomes]
rs13078633	0.83[CHB][hapmap]
rs1355627	0.87[ASN][1000 genomes]
rs1398340	0.87[ASN][1000 genomes]
rs1398342	0.87[ASN][1000 genomes]
rs1398344	0.81[ASN][1000 genomes]
rs1398355	0.87[ASN][1000 genomes]
rs1398357	0.87[ASN][1000 genomes]
rs1398358	0.87[ASN][1000 genomes]
rs1462295	0.84[EUR][1000 genomes]
rs1512512	0.87[ASN][1000 genomes]
rs1512662	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1606350	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16856946	0.84[EUR][1000 genomes]
rs1877461	0.87[ASN][1000 genomes]
rs1913090	0.82[EUR][1000 genomes]
rs1913092	0.88[ASN][1000 genomes]
rs1913093	0.88[ASN][1000 genomes]
rs1913096	0.87[ASN][1000 genomes]
rs1913097	0.87[ASN][1000 genomes]
rs2055968	1.00[EUR][1000 genomes]
rs2089941	0.88[ASN][1000 genomes]
rs2089942	0.88[ASN][1000 genomes]
rs2175608	0.83[ASN][1000 genomes]
rs2399329	0.87[ASN][1000 genomes]
rs2399331	0.87[ASN][1000 genomes]
rs2895375	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3899903	0.87[ASN][1000 genomes]
rs4682009	0.87[ASN][1000 genomes]
rs4682010	0.87[ASN][1000 genomes]
rs4682011	0.87[ASN][1000 genomes]
rs4682186	0.87[ASN][1000 genomes]
rs57198450	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57680282	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58500543	0.84[EUR][1000 genomes]
rs59612531	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59985710	0.95[EUR][1000 genomes]
rs60302938	0.84[EUR][1000 genomes]
rs62270060	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62270063	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62270076	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62270083	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62270086	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62270095	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62270100	0.95[EUR][1000 genomes]
rs62270121	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62270122	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62270123	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62270124	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62270127	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62270128	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62270129	0.82[AMR][1000 genomes]
rs62270130	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62270134	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62271576	0.84[EUR][1000 genomes]
rs62271586	0.84[EUR][1000 genomes]
rs62271587	0.84[EUR][1000 genomes]
rs62271588	0.84[EUR][1000 genomes]
rs62271591	0.84[EUR][1000 genomes]
rs62271592	0.84[EUR][1000 genomes]
rs62271606	0.95[EUR][1000 genomes]
rs62271607	0.95[EUR][1000 genomes]
rs62271608	0.95[EUR][1000 genomes]
rs62271609	0.95[EUR][1000 genomes]
rs62271610	0.95[EUR][1000 genomes]
rs62271612	0.95[EUR][1000 genomes]
rs62271615	0.95[EUR][1000 genomes]
rs62271616	0.95[EUR][1000 genomes]
rs62271618	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62271620	0.95[EUR][1000 genomes]
rs62271621	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62271636	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62271639	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62271642	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62271644	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62271646	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62271647	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62271763	0.84[EUR][1000 genomes]
rs62271766	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62271784	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62271785	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6765569	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6768474	0.86[EUR][1000 genomes]
rs6768646	0.87[ASN][1000 genomes]
rs6768745	0.87[ASN][1000 genomes]
rs6772035	0.84[EUR][1000 genomes]
rs6776067	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6781483	0.95[EUR][1000 genomes]
rs6781525	0.87[ASN][1000 genomes]
rs6781864	0.87[ASN][1000 genomes]
rs6784648	0.84[EUR][1000 genomes]
rs7617903	0.89[EUR][1000 genomes]
rs7621339	0.87[ASN][1000 genomes]
rs7628651	0.87[ASN][1000 genomes]
rs7628733	0.84[EUR][1000 genomes]
rs7631316	0.95[EUR][1000 genomes]
rs7632974	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7634524	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7634536	0.86[AMR][1000 genomes]
rs7650722	0.84[EUR][1000 genomes]
rs7652062	0.86[EUR][1000 genomes]
rs9653909	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9825259	1.00[CEU][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes]
rs9858359	0.84[EUR][1000 genomes]
rs986205	0.82[EUR][1000 genomes]
rs986206	0.82[EUR][1000 genomes]
rs9866331	0.80[ASN][1000 genomes]
rs9873714	0.84[EUR][1000 genomes]
rs9874430	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv829672	chr3:110206693-110361632	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv460820	chr3:110283716-110321035	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv591274	chr3:110283716-110321035	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110316200-110320000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:110316800-110320000	Enhancers	HUES48 Cell Line	embryonic stem cell

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