Variant report

Variant	rs7617903
Chromosome Location	chr3:110182841-110182842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:110181992..110184815-chr3:110198027..110199804,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs12054102	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13078633	0.90[CHB][hapmap]
rs1512662	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1606350	0.89[EUR][1000 genomes]
rs16856946	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2055968	0.89[EUR][1000 genomes]
rs2895375	0.89[EUR][1000 genomes]
rs57680282	0.84[EUR][1000 genomes]
rs58500543	0.95[EUR][1000 genomes]
rs59985710	0.84[EUR][1000 genomes]
rs62269437	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62269438	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62269439	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62270060	0.84[EUR][1000 genomes]
rs62270063	0.84[EUR][1000 genomes]
rs62270076	0.84[EUR][1000 genomes]
rs62270083	0.84[EUR][1000 genomes]
rs62270086	0.84[EUR][1000 genomes]
rs62270095	0.84[EUR][1000 genomes]
rs62270100	0.84[EUR][1000 genomes]
rs62271562	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62271576	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62271578	0.89[EUR][1000 genomes]
rs62271586	0.95[EUR][1000 genomes]
rs62271587	0.95[EUR][1000 genomes]
rs62271588	0.95[EUR][1000 genomes]
rs62271591	0.95[EUR][1000 genomes]
rs62271592	0.95[EUR][1000 genomes]
rs62271606	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62271607	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62271608	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62271609	0.84[EUR][1000 genomes]
rs62271610	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62271612	0.84[EUR][1000 genomes]
rs62271615	0.84[EUR][1000 genomes]
rs62271616	0.84[EUR][1000 genomes]
rs62271618	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62271620	0.84[EUR][1000 genomes]
rs62271621	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62271636	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62271639	0.84[EUR][1000 genomes]
rs62271642	0.84[EUR][1000 genomes]
rs62271644	0.84[EUR][1000 genomes]
rs62271647	0.84[EUR][1000 genomes]
rs6437914	0.85[EUR][1000 genomes]
rs6765569	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6781483	0.84[EUR][1000 genomes]
rs6784648	0.95[EUR][1000 genomes]
rs7628733	0.95[EUR][1000 genomes]
rs7631316	0.84[EUR][1000 genomes]
rs7634524	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs7638452	0.89[ASN][1000 genomes]
rs9653909	0.84[EUR][1000 genomes]
rs9809312	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829669	chr3:110022724-110188397	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv460819	chr3:110080893-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv470838	chr3:110083045-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv591273	chr3:110087264-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877337	chr3:110091627-110186611	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110182000-110183400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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