Variant report

Variant	rs7638452
Chromosome Location	chr3:110180719-110180720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:110175281..110177877-chr3:110179884..110181933,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10511286	0.91[EUR][1000 genomes]
rs11713405	0.91[EUR][1000 genomes]
rs11715486	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11719761	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11721302	0.91[EUR][1000 genomes]
rs12054102	0.89[ASN][1000 genomes]
rs12633463	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12633668	0.88[EUR][1000 genomes]
rs12638763	0.91[EUR][1000 genomes]
rs13058952	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13062461	0.83[EUR][1000 genomes]
rs13065612	0.91[EUR][1000 genomes]
rs13069621	0.91[EUR][1000 genomes]
rs13070606	0.90[EUR][1000 genomes]
rs13078633	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13081130	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13093393	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16856946	0.89[ASN][1000 genomes]
rs17202417	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17727387	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1849379	0.85[EUR][1000 genomes]
rs2055966	0.88[CHD][hapmap]
rs2399335	0.88[CHD][hapmap]
rs34998073	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35156093	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35372780	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35859521	0.91[EUR][1000 genomes]
rs4682179	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4682180	0.84[EUR][1000 genomes]
rs4682182	0.92[CEU][hapmap];0.93[TSI][hapmap]
rs4682588	0.91[EUR][1000 genomes]
rs4682589	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682590	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682596	0.92[CEU][hapmap];0.93[TSI][hapmap]
rs62271562	0.91[ASN][1000 genomes]
rs62271576	0.90[ASN][1000 genomes]
rs6771696	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6787448	0.91[EUR][1000 genomes]
rs6788158	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7617903	0.89[ASN][1000 genomes]
rs7626514	0.81[EUR][1000 genomes]
rs7630242	0.82[EUR][1000 genomes]
rs7634524	0.82[CHB][hapmap]
rs9815868	0.87[CHD][hapmap]
rs9831873	0.84[EUR][1000 genomes]
rs9843950	0.88[CHD][hapmap]
rs9851821	0.83[EUR][1000 genomes]
rs9872133	0.85[EUR][1000 genomes]
rs9877235	0.84[EUR][1000 genomes]
rs9877920	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829669	chr3:110022724-110188397	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv460819	chr3:110080893-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv470838	chr3:110083045-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv591273	chr3:110087264-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877337	chr3:110091627-110186611	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110180200-110180800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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