Variant report

Variant	rs35372780
Chromosome Location	chr3:110154651-110154652
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11708583	0.91[EUR][1000 genomes]
rs11713048	0.91[EUR][1000 genomes]
rs11715486	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11720997	0.91[EUR][1000 genomes]
rs11929326	0.81[ASN][1000 genomes]
rs12633463	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13058952	0.88[EUR][1000 genomes]
rs13081130	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13093393	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1398422	0.91[EUR][1000 genomes]
rs17727387	0.88[EUR][1000 genomes]
rs34998073	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35156093	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4682578	0.90[EUR][1000 genomes]
rs4682579	0.90[EUR][1000 genomes]
rs4682589	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4682590	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62269437	0.86[ASN][1000 genomes]
rs62269438	0.86[ASN][1000 genomes]
rs62269439	0.88[ASN][1000 genomes]
rs6771696	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6788158	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7638452	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9851821	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460818	chr3:110007205-110155824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591272	chr3:110007205-110155824	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829669	chr3:110022724-110188397	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv460819	chr3:110080893-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv470838	chr3:110083045-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv591273	chr3:110087264-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv877337	chr3:110091627-110186611	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1838188	chr3:110134108-110173739	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110153800-110157200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:110154600-110155000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:110154600-110155000	Enhancers	Liver	Liver
4	chr3:110154600-110157400	Enhancers	HepG2	liver

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