Variant report

Variant	rs1398346
Chromosome Location	chr3:110271943-110271944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs1028025	0.81[EUR][1000 genomes]
rs1028026	0.85[ASN][1000 genomes]
rs1028027	0.85[ASN][1000 genomes]
rs10934045	0.88[ASN][1000 genomes]
rs10934046	0.91[ASN][1000 genomes]
rs10934048	0.81[EUR][1000 genomes]
rs10934049	0.91[ASN][1000 genomes]
rs10934050	0.88[ASN][1000 genomes]
rs11918532	0.92[CEU][hapmap];0.95[TSI][hapmap]
rs11919803	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs11921362	0.92[CEU][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs11925811	0.81[EUR][1000 genomes]
rs11927048	0.81[EUR][1000 genomes]
rs11929326	0.87[EUR][1000 genomes]
rs12487462	0.90[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs12493324	0.88[ASN][1000 genomes]
rs13059626	0.81[EUR][1000 genomes]
rs13062461	0.84[ASN][1000 genomes]
rs13065299	0.81[EUR][1000 genomes]
rs13069168	0.81[EUR][1000 genomes]
rs13080532	0.81[EUR][1000 genomes]
rs13084975	0.81[EUR][1000 genomes]
rs13085149	0.92[CEU][hapmap]
rs13085426	0.81[EUR][1000 genomes]
rs13085783	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs13091019	0.81[EUR][1000 genomes]
rs13099280	0.81[EUR][1000 genomes]
rs1398347	0.92[ASN][1000 genomes]
rs1398348	0.91[ASN][1000 genomes]
rs1398349	0.91[ASN][1000 genomes]
rs1398354	0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs1398409	0.91[ASN][1000 genomes]
rs1512514	0.91[ASN][1000 genomes]
rs1512516	0.92[CEU][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs1512519	0.91[ASN][1000 genomes]
rs1512540	0.88[ASN][1000 genomes]
rs1512660	0.88[ASN][1000 genomes]
rs1512661	0.88[ASN][1000 genomes]
rs1574700	0.88[ASN][1000 genomes]
rs1588653	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs1606345	0.92[ASN][1000 genomes]
rs1606346	0.92[ASN][1000 genomes]
rs1606347	0.90[ASN][1000 genomes]
rs1606348	0.92[ASN][1000 genomes]
rs1606349	0.91[ASN][1000 genomes]
rs1849379	0.82[ASN][1000 genomes]
rs1913088	0.88[ASN][1000 genomes]
rs1913100	0.91[ASN][1000 genomes]
rs2055966	0.91[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs2055967	0.92[ASN][1000 genomes]
rs2055968	0.93[ASN][1000 genomes]
rs2399335	0.91[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs2399336	0.90[ASN][1000 genomes]
rs2399337	0.87[ASN][1000 genomes]
rs34143006	0.81[EUR][1000 genomes]
rs34285697	0.81[EUR][1000 genomes]
rs34312493	0.81[EUR][1000 genomes]
rs34323078	0.81[EUR][1000 genomes]
rs34364119	0.81[EUR][1000 genomes]
rs35129668	0.81[EUR][1000 genomes]
rs35232786	0.81[EUR][1000 genomes]
rs35342735	0.81[EUR][1000 genomes]
rs36094191	0.81[EUR][1000 genomes]
rs3914231	0.81[EUR][1000 genomes]
rs4682180	0.85[ASN][1000 genomes]
rs4682181	0.92[ASN][1000 genomes]
rs4682594	0.88[ASN][1000 genomes]
rs55782499	0.89[ASN][1000 genomes]
rs56067719	0.88[ASN][1000 genomes]
rs56396321	0.89[ASN][1000 genomes]
rs59985710	0.90[ASN][1000 genomes]
rs62271609	0.90[ASN][1000 genomes]
rs62271612	0.90[ASN][1000 genomes]
rs62271615	0.90[ASN][1000 genomes]
rs62271616	0.90[ASN][1000 genomes]
rs62271620	0.88[ASN][1000 genomes]
rs66536849	0.81[EUR][1000 genomes]
rs67064864	0.91[ASN][1000 genomes]
rs67166271	0.91[ASN][1000 genomes]
rs6763158	0.81[EUR][1000 genomes]
rs6774121	0.81[EUR][1000 genomes]
rs6780070	0.89[ASN][1000 genomes]
rs6781483	0.90[ASN][1000 genomes]
rs6784648	0.87[ASN][1000 genomes]
rs6785576	0.89[ASN][1000 genomes]
rs6798115	0.81[EUR][1000 genomes]
rs6809686	0.81[EUR][1000 genomes]
rs73217304	0.91[ASN][1000 genomes]
rs73217311	0.92[ASN][1000 genomes]
rs73217315	0.92[ASN][1000 genomes]
rs7613348	0.88[ASN][1000 genomes]
rs7616260	0.91[ASN][1000 genomes]
rs7623008	0.89[ASN][1000 genomes]
rs7626511	0.89[ASN][1000 genomes]
rs7626602	0.86[ASN][1000 genomes]
rs7627828	0.91[ASN][1000 genomes]
rs7631316	0.90[ASN][1000 genomes]
rs7638870	0.92[ASN][1000 genomes]
rs7640587	0.88[ASN][1000 genomes]
rs7640755	0.91[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs7640794	0.88[ASN][1000 genomes]
rs7644836	0.92[ASN][1000 genomes]
rs7648338	0.89[ASN][1000 genomes]
rs7648726	0.91[ASN][1000 genomes]
rs7652124	0.92[ASN][1000 genomes]
rs949970	0.91[ASN][1000 genomes]
rs9809100	0.92[ASN][1000 genomes]
rs9813893	0.90[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs9814176	0.92[ASN][1000 genomes]
rs9815066	0.92[ASN][1000 genomes]
rs9815868	0.91[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs9816249	0.92[ASN][1000 genomes]
rs9820458	0.92[ASN][1000 genomes]
rs9821761	0.90[ASN][1000 genomes]
rs9826577	0.88[ASN][1000 genomes]
rs9831873	0.83[ASN][1000 genomes]
rs9839635	0.89[ASN][1000 genomes]
rs9841439	0.81[EUR][1000 genomes]
rs9843950	0.91[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs9846566	0.88[ASN][1000 genomes]
rs9847279	0.89[ASN][1000 genomes]
rs9855219	0.88[ASN][1000 genomes]
rs9860708	0.88[ASN][1000 genomes]
rs9867550	0.88[ASN][1000 genomes]
rs9872133	0.82[ASN][1000 genomes]
rs9872620	0.91[ASN][1000 genomes]
rs9877123	0.92[ASN][1000 genomes]
rs9877235	0.84[ASN][1000 genomes]
rs9877354	0.92[ASN][1000 genomes]
rs9877472	0.88[ASN][1000 genomes]
rs9877920	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv829672	chr3:110206693-110361632	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv2760771	chr3:110263131-110288760	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	nsv526057	chr3:110271283-110283716	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110270000-110286800	Weak transcription	K562	blood

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