Variant report

Variant	rs59832918
Chromosome Location	chr3:99194745-99194746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs59106684	1.00[AMR][1000 genomes]
rs73858442	1.00[AMR][1000 genomes]
rs73858445	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858446	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858448	0.87[AFR][1000 genomes]
rs73858453	0.87[AFR][1000 genomes]
rs73858456	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858458	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858459	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858570	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858571	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858573	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858576	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858577	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858805	1.00[AMR][1000 genomes]
rs73858844	1.00[AMR][1000 genomes]
rs73858850	1.00[AMR][1000 genomes]
rs73861422	1.00[AMR][1000 genomes]
rs7627465	1.00[AMR][1000 genomes]
rs7641113	1.00[AMR][1000 genomes]
rs7652601	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv3916	chr3:99186008-99232052	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99192600-99194800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:99192600-99194800	Enhancers	NHDF-Ad	bronchial
3	chr3:99194000-99194800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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