Variant report

Variant	rs7652601
Chromosome Location	chr3:99337066-99337067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs59106684	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59832918	1.00[AMR][1000 genomes]
rs6440715	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs73858442	1.00[AMR][1000 genomes]
rs73858445	1.00[AMR][1000 genomes]
rs73858446	1.00[AMR][1000 genomes]
rs73858456	1.00[AMR][1000 genomes]
rs73858458	1.00[AMR][1000 genomes]
rs73858459	1.00[AMR][1000 genomes]
rs73858570	1.00[AMR][1000 genomes]
rs73858571	1.00[AMR][1000 genomes]
rs73858573	1.00[AMR][1000 genomes]
rs73858576	1.00[AMR][1000 genomes]
rs73858577	1.00[AMR][1000 genomes]
rs73858805	1.00[AMR][1000 genomes]
rs73858844	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73858850	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73861422	1.00[AMR][1000 genomes]
rs7627465	1.00[AMR][1000 genomes]
rs7641113	1.00[AMR][1000 genomes]
rs7651549	1.00[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99333600-99345800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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