Variant report

Variant	rs59838569
Chromosome Location	chr20:52705686-52705687
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:56702451..56704475-chr20:52703894..52705699,2	MCF-7	breast:
2	chr20:52564545..52567284-chr20:52704374..52707126,2	MCF-7	breast:
3	chr20:52704364..52707054-chrX:153237853..153239733,2	MCF-7	breast:
4	chr20:52704547..52706366-chr20:52801892..52804445,2	K562	blood:
5	chr20:46417960..46420786-chr20:52704261..52705871,2	MCF-7	breast:
6	chr20:52704170..52707126-chr8:116516969..116519766,2	MCF-7	breast:
7	chr20:46412955..46417498-chr20:52699874..52705785,9	MCF-7	breast:
8	chr20:49357705..49359393-chr20:52704254..52706930,2	MCF-7	breast:
9	chr20:41002277..41004759-chr20:52705154..52707307,2	MCF-7	breast:
10	chr20:46412091..46416534-chr20:52700009..52706788,8	MCF-7	breast:
11	chr17:56734710..56738015-chr20:52703039..52706122,4	MCF-7	breast:
12	chr17:56703018..56712407-chr20:52697460..52725685,93	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000212195	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000177854	Chromatin interaction
ENSG00000196562	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56665066	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67534216	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52699200-52707000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr20:52701000-52706600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr20:52702200-52707600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr20:52703800-52708400	Weak transcription	A549	lung
5	chr20:52704000-52708200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr20:52704200-52706200	Enhancers	HSMMtube	muscle
7	chr20:52705200-52708800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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