Variant report

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:52709593..52716717-chr20:52810616..52817994,186	MCF-7	breast:
2	chr17:57861820..57864479-chr20:52713391..52716346,2	MCF-7	breast:
3	chr20:52711860..52714694-chr20:53016400..53018656,2	MCF-7	breast:
4	chr17:56706304..56710637-chr20:52708902..52722942,22	MCF-7	breast:
5	chr20:41012582..41015246-chr20:52713770..52715476,2	MCF-7	breast:
6	chr20:52711973..52715362-chr20:53262880..53265739,4	MCF-7	breast:
7	chr20:46410730..46421216-chr20:52711028..52724253,28	MCF-7	breast:
8	chr20:52713364..52715301-chr20:53263047..53264602,2	MCF-7	breast:
9	chr20:52713713..52714430-chr9:78659517..78660079,2	MCF-7	breast:
10	chr20:52555019..52557476-chr20:52711896..52714527,2	MCF-7	breast:
11	chr20:52712849..52715626-chr5:70882541..70885049,2	MCF-7	breast:
12	chr20:52711537..52718198-chr20:52810789..52818597,362	MCF-7	breast:
13	chr20:52713115..52714142-chr3:64518805..64519869,4	MCF-7	breast:
14	chr20:52713488..52714426-chr20:52790074..52790878,2	MCF-7	breast:
15	chr20:52712728..52714049-chr20:52823257..52824723,11	MCF-7	breast:
16	chr17:56735171..56737953-chr20:52710895..52716530,6	MCF-7	breast:
17	chr20:41008043..41009985-chr20:52712119..52714743,2	MCF-7	breast:
18	chr20:52713350..52714156-chr20:52814265..52814790,3	K562	blood:
19	chr17:56734263..56738304-chr20:52709856..52719047,15	MCF-7	breast:
20	chr17:56703018..56712407-chr20:52697460..52725685,93	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56665066	0.86[AFR][1000 genomes]
rs59838569	0.81[AFR][1000 genomes]
rs66818759	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73279726	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52713200-52716800	Enhancers	HepG2	liver
2	chr20:52713600-52714200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr20:52713600-52714400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:52713800-52716600	Enhancers	A549	lung
5	chr20:52714000-52718000	Weak transcription	Placenta	Placenta
6	chr20:52714000-52721200	Weak transcription	HMEC	breast
7	chr20:52714000-52721800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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