Variant report

Variant	rs73279726
Chromosome Location	chr20:52717275-52717276
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:56978457..56980198-chr20:52716373..52719120,2	MCF-7	breast:
2	chr17:56706304..56710637-chr20:52708902..52722942,22	MCF-7	breast:
3	chr17:57921397..57924347-chr20:52716590..52720160,4	MCF-7	breast:
4	chr20:46410730..46421216-chr20:52711028..52724253,28	MCF-7	breast:
5	chr20:52715909..52718774-chr20:55838311..55841163,2	MCF-7	breast:
6	chr20:52711537..52718198-chr20:52810789..52818597,362	MCF-7	breast:
7	chr17:57919102..57921149-chr20:52714565..52717562,3	MCF-7	breast:
8	chr17:56734263..56738304-chr20:52709856..52719047,15	MCF-7	breast:
9	chr17:56703018..56712407-chr20:52697460..52725685,93	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000196562	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000202077	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59132978	0.91[ASN][1000 genomes]
rs66818759	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs67534216	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52714000-52718000	Weak transcription	Placenta	Placenta
2	chr20:52714000-52721200	Weak transcription	HMEC	breast
3	chr20:52714000-52721800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:52715800-52719800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr20:52716600-52717800	Weak transcription	A549	lung
6	chr20:52716800-52718400	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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