Variant report

Variant	rs5984885
Chromosome Location	chrX:91367206-91367207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2573905	0.84[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap]
rs2759829	0.93[CEU][hapmap];0.86[CHB][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs369539	0.88[MEX][hapmap]
rs3865923	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs397580	0.88[MEX][hapmap]
rs397902	0.88[MEX][hapmap]
rs419619	0.88[MEX][hapmap]
rs432650	0.88[MEX][hapmap]
rs453810	0.88[MEX][hapmap]
rs5942157	0.88[MEX][hapmap]
rs5942163	0.88[MEX][hapmap]
rs5942185	0.88[MEX][hapmap]
rs5984894	0.84[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432350	chrX:91158935-91590765	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3433972	chrX:91366396-91369994	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
3	esv3427453	chrX:91366846-91369844	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:91360600-91373200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chrX:91362400-91373000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chrX:91363600-91376400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chrX:91364800-91368600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chrX:91365000-91367400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chrX:91366000-91369000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chrX:91366000-91372800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chrX:91366600-91368400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chrX:91367200-91374200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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