Variant report

Variant	rs419619
Chromosome Location	chrX:91517038-91517039
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs117393	0.84[CEU][hapmap]
rs12687951	0.84[CEU][hapmap]
rs12690297	0.84[CEU][hapmap]
rs17320928	0.84[CEU][hapmap]
rs2025092	1.00[CEU][hapmap]
rs2025093	0.84[CEU][hapmap]
rs369539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs369919	0.83[CEU][hapmap]
rs370928	0.84[CEU][hapmap]
rs371681	0.84[CEU][hapmap]
rs376664	0.84[CEU][hapmap];0.81[TSI][hapmap]
rs378620	0.84[CEU][hapmap]
rs382096	0.84[CEU][hapmap]
rs397580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs397902	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs410901	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs415971	0.82[CEU][hapmap]
rs418001	0.84[YRI][hapmap]
rs421001	0.83[ASW][hapmap];1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs426592	0.91[ASW][hapmap];0.94[CEU][hapmap]
rs4323631	0.84[CEU][hapmap]
rs432650	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs440205	0.84[CEU][hapmap]
rs453810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs4893309	0.84[CEU][hapmap];0.81[TSI][hapmap]
rs5941049	0.84[CEU][hapmap]
rs5942149	0.94[YRI][hapmap]
rs5942150	0.89[YRI][hapmap]
rs5942151	0.89[YRI][hapmap]
rs5942157	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[YRI][hapmap]
rs5942158	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs5942161	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs5942163	0.83[ASW][hapmap];1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs5942164	0.84[CEU][hapmap];0.86[TSI][hapmap]
rs5942185	0.83[ASW][hapmap];1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs5942187	0.84[CEU][hapmap];0.81[TSI][hapmap]
rs5984161	0.84[CEU][hapmap]
rs5984885	0.88[MEX][hapmap]
rs5984909	0.84[CEU][hapmap];0.81[TSI][hapmap]
rs6522496	0.83[CEU][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432350	chrX:91158935-91590765	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3435339	chrX:91427773-91539017	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv532885	chrX:91428554-92377178	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv533436	chrX:91434301-91519622	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:91515200-91522400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chrX:91515800-91524600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chrX:91516200-91517200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chrX:91517000-91517400	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links