Variant report
| Variant | rs370928 |
|---|---|
| Chromosome Location | chrX:91494654-91494655 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs117393 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
| rs12686875 | 0.94[CEU][hapmap];0.89[TSI][hapmap] |
| rs12687951 | 1.00[CEU][hapmap] |
| rs12690297 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap] |
| rs17320928 | 1.00[CEU][hapmap];0.89[TSI][hapmap] |
| rs2025092 | 0.84[CEU][hapmap] |
| rs2025093 | 1.00[CEU][hapmap] |
| rs369539 | 0.83[CEU][hapmap] |
| rs369919 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs371681 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs376664 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap] |
| rs378620 | 1.00[CEU][hapmap] |
| rs382096 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap] |
| rs397580 | 0.84[CEU][hapmap];0.81[TSI][hapmap] |
| rs397902 | 0.83[CEU][hapmap];0.81[TSI][hapmap] |
| rs410901 | 0.84[CEU][hapmap] |
| rs415971 | 1.00[CEU][hapmap] |
| rs419619 | 0.84[CEU][hapmap] |
| rs421001 | 0.84[CEU][hapmap] |
| rs4323631 | 1.00[CEU][hapmap];0.86[JPT][hapmap] |
| rs432650 | 0.84[CEU][hapmap];0.85[TSI][hapmap] |
| rs440205 | 1.00[CEU][hapmap];0.94[TSI][hapmap] |
| rs453810 | 0.84[CEU][hapmap];0.85[TSI][hapmap] |
| rs4893309 | 1.00[CEU][hapmap] |
| rs5941049 | 1.00[CEU][hapmap] |
| rs5942157 | 0.84[CEU][hapmap] |
| rs5942158 | 0.82[CEU][hapmap] |
| rs5942161 | 0.83[CEU][hapmap] |
| rs5942163 | 0.84[CEU][hapmap] |
| rs5942164 | 1.00[CEU][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap] |
| rs5942185 | 0.84[CEU][hapmap] |
| rs5942187 | 1.00[CEU][hapmap] |
| rs5984161 | 1.00[CEU][hapmap] |
| rs5984909 | 1.00[CEU][hapmap] |
| rs6522496 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432350 | chrX:91158935-91590765 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv3435339 | chrX:91427773-91539017 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv532885 | chrX:91428554-92377178 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv533436 | chrX:91434301-91519622 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
