Variant report

Variant	rs6522496
Chromosome Location	chrX:91463488-91463489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs117393	1.00[CEU][hapmap]
rs118217	0.89[YRI][hapmap]
rs118218	0.89[YRI][hapmap]
rs12686875	0.93[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs12687951	1.00[CEU][hapmap]
rs12690297	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs17320928	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs2025092	0.83[CEU][hapmap]
rs2025093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs369539	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs369919	1.00[CEU][hapmap]
rs370928	1.00[CEU][hapmap]
rs371681	1.00[CEU][hapmap]
rs376664	1.00[CEU][hapmap]
rs378620	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs382096	1.00[CEU][hapmap]
rs382841	0.89[YRI][hapmap]
rs393785	0.89[YRI][hapmap]
rs397580	0.83[CEU][hapmap];0.85[TSI][hapmap]
rs397902	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs410882	0.89[YRI][hapmap]
rs410901	0.83[CEU][hapmap]
rs4141535	0.89[YRI][hapmap]
rs415971	1.00[CEU][hapmap]
rs419619	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs421001	0.83[CEU][hapmap]
rs4279764	0.89[YRI][hapmap]
rs4281262	0.89[YRI][hapmap]
rs4323631	1.00[CEU][hapmap]
rs432650	0.83[CEU][hapmap];0.90[TSI][hapmap]
rs435669	0.89[YRI][hapmap]
rs440205	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap]
rs443810	0.89[YRI][hapmap]
rs453810	0.83[CEU][hapmap];0.90[TSI][hapmap]
rs4893309	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5941049	1.00[CEU][hapmap]
rs5942153	0.89[YRI][hapmap]
rs5942157	0.83[CEU][hapmap]
rs5942158	0.82[CEU][hapmap]
rs5942161	0.83[CEU][hapmap]
rs5942163	0.83[CEU][hapmap]
rs5942164	1.00[CEU][hapmap];0.95[TSI][hapmap]
rs5942183	0.89[YRI][hapmap]
rs5942185	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs5942186	0.89[YRI][hapmap]
rs5942187	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5984161	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.97[LWK][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap]
rs5984905	0.84[YRI][hapmap]
rs5984909	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6418101	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432350	chrX:91158935-91590765	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3435339	chrX:91427773-91539017	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv532885	chrX:91428554-92377178	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv533436	chrX:91434301-91519622	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:91458800-91464000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chrX:91459000-91463800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chrX:91459800-91464800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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