Variant report

Variant	rs421001
Chromosome Location	chrX:91478913-91478914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs117393	0.84[CEU][hapmap]
rs12687951	0.84[CEU][hapmap]
rs12690297	0.84[CEU][hapmap]
rs17320928	0.84[CEU][hapmap]
rs2025092	1.00[CEU][hapmap]
rs2025093	0.84[CEU][hapmap]
rs369539	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs369919	0.83[CEU][hapmap]
rs370928	0.84[CEU][hapmap]
rs371681	0.84[CEU][hapmap]
rs376664	0.84[CEU][hapmap]
rs378620	0.84[CEU][hapmap]
rs382096	0.84[CEU][hapmap]
rs397580	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs397902	0.83[ASW][hapmap];1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs410901	0.83[ASW][hapmap];1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs415971	0.82[CEU][hapmap]
rs418001	0.84[YRI][hapmap]
rs419619	0.83[ASW][hapmap];1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs426592	0.91[ASW][hapmap];0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4323631	0.84[CEU][hapmap]
rs432650	0.83[ASW][hapmap];1.00[CEU][hapmap];0.88[JPT][hapmap];0.91[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs440205	0.84[CEU][hapmap]
rs453810	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4893309	0.84[CEU][hapmap]
rs5941049	0.84[CEU][hapmap]
rs5942149	0.94[YRI][hapmap]
rs5942150	0.89[YRI][hapmap]
rs5942151	0.89[YRI][hapmap]
rs5942157	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs5942158	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs5942161	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5942163	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5942164	0.84[CEU][hapmap];0.82[TSI][hapmap]
rs5942185	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs5942187	0.84[CEU][hapmap]
rs5984161	0.84[CEU][hapmap]
rs5984909	0.84[CEU][hapmap]
rs6522496	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432350	chrX:91158935-91590765	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3435339	chrX:91427773-91539017	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv532885	chrX:91428554-92377178	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv533436	chrX:91434301-91519622	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:91470200-91481200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chrX:91471000-91481000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chrX:91478000-91480800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links