Variant report

Variant	rs12690297
Chromosome Location	chrX:91462186-91462187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs117393	1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs12557318	0.88[JPT][hapmap]
rs12558816	0.88[JPT][hapmap]
rs12686875	0.94[CEU][hapmap];0.94[TSI][hapmap]
rs12687951	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs17274218	1.00[YRI][hapmap]
rs17312993	0.88[JPT][hapmap]
rs17320928	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs2025091	0.88[JPT][hapmap]
rs2025092	0.84[CEU][hapmap]
rs2025093	1.00[CEU][hapmap]
rs369539	0.83[CEU][hapmap]
rs369919	1.00[CEU][hapmap]
rs370928	1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs371681	1.00[CEU][hapmap]
rs376664	1.00[CEU][hapmap]
rs378620	1.00[CEU][hapmap]
rs382096	1.00[CEU][hapmap]
rs397580	0.84[CEU][hapmap]
rs397902	0.83[CEU][hapmap];0.80[TSI][hapmap]
rs410901	0.84[CEU][hapmap]
rs415971	1.00[CEU][hapmap]
rs419619	0.84[CEU][hapmap]
rs421001	0.84[CEU][hapmap]
rs4323631	1.00[CEU][hapmap]
rs432650	0.84[CEU][hapmap]
rs4358964	0.88[JPT][hapmap]
rs440205	1.00[CEU][hapmap]
rs4532751	0.88[JPT][hapmap]
rs453810	0.84[CEU][hapmap]
rs4893309	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs5941046	0.88[JPT][hapmap]
rs5941047	0.88[JPT][hapmap]
rs5941048	0.88[JPT][hapmap]
rs5941049	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs5942140	0.88[JPT][hapmap]
rs5942146	0.88[JPT][hapmap]
rs5942147	0.88[JPT][hapmap]
rs5942157	0.84[CEU][hapmap]
rs5942158	0.82[CEU][hapmap]
rs5942161	0.83[CEU][hapmap]
rs5942163	0.84[CEU][hapmap]
rs5942164	1.00[CEU][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap]
rs5942185	0.84[CEU][hapmap]
rs5942187	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs5984161	1.00[CEU][hapmap]
rs5984909	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs6522496	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs6618889	0.87[JPT][hapmap]
rs6618890	0.88[JPT][hapmap]
rs6618895	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432350	chrX:91158935-91590765	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3435339	chrX:91427773-91539017	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv532885	chrX:91428554-92377178	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv533436	chrX:91434301-91519622	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:91458800-91464000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chrX:91459000-91463800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chrX:91459800-91464800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links