Variant report

Variant	rs59877332
Chromosome Location	chr10:22162051-22162052
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58900057	0.85[AFR][1000 genomes]
rs7080207	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7916536	0.83[AMR][1000 genomes]
rs7916606	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22124200-22169800	Weak transcription	Right Ventricle	heart
2	chr10:22124400-22163000	Weak transcription	Ovary	ovary
3	chr10:22140800-22169800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:22140800-22174800	Weak transcription	HSMM	muscle
5	chr10:22149600-22180200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:22153000-22169800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:22153000-22200600	Weak transcription	Osteobl	bone
8	chr10:22155400-22169800	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:22156400-22164000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:22156600-22163000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:22156800-22168000	Weak transcription	Adipose Nuclei	Adipose
12	chr10:22156800-22172000	Weak transcription	Fetal Brain Male	brain
13	chr10:22158000-22169800	Weak transcription	Primary T cells from cord blood	blood
14	chr10:22158600-22162600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:22159400-22163000	Weak transcription	Esophagus	oesophagus
16	chr10:22159400-22164200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:22159400-22164600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr10:22160000-22163400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:22160200-22169800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:22160400-22178600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:22160400-22195600	Weak transcription	NHEK	skin
22	chr10:22160600-22164000	ZNF genes & repeats	Fetal Intestine Small	intestine
23	chr10:22160600-22170000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr10:22160600-22173600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr10:22160800-22162400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
26	chr10:22161000-22162200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:22161000-22162200	ZNF genes & repeats	Fetal Stomach	stomach
28	chr10:22161000-22162400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:22161000-22162600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:22161200-22162200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
31	chr10:22161200-22162400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:22161200-22163200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:22161200-22163400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
34	chr10:22161400-22162800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
35	chr10:22161400-22163200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:22161400-22207600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:22161600-22162400	ZNF genes & repeats	K562	blood
38	chr10:22161600-22163800	Weak transcription	Gastric	stomach
39	chr10:22161600-22164000	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr10:22161600-22169800	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:22161800-22162200	ZNF genes & repeats	Pancreas	Pancrea
42	chr10:22161800-22162400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:22161800-22162800	Weak transcription	Fetal Lung	lung
44	chr10:22162000-22162200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:22162000-22163400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
46	chr10:22162000-22163400	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:22162000-22164600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:22162000-22164800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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