Variant report

Variant	rs58900057
Chromosome Location	chr10:22132425-22132426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs57514919	0.89[EUR][1000 genomes]
rs57727726	0.89[EUR][1000 genomes]
rs57988650	0.89[EUR][1000 genomes]
rs58341039	0.89[EUR][1000 genomes]
rs59877332	0.85[AFR][1000 genomes]
rs60111702	0.89[EUR][1000 genomes]
rs60793805	0.89[EUR][1000 genomes]
rs61567680	0.89[EUR][1000 genomes]
rs7072340	0.89[EUR][1000 genomes]
rs7080207	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7082546	0.89[EUR][1000 genomes]
rs7094231	0.81[EUR][1000 genomes]
rs7096530	0.81[EUR][1000 genomes]
rs7916536	0.89[EUR][1000 genomes]
rs7916606	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7923514	0.89[EUR][1000 genomes]
rs7924290	0.81[AFR][1000 genomes]
rs9665526	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22119600-22136800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:22121600-22138400	Weak transcription	Primary B cells from cord blood	blood
3	chr10:22123200-22138600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:22123800-22137600	Weak transcription	Primary T cells from cord blood	blood
5	chr10:22124200-22169800	Weak transcription	Right Ventricle	heart
6	chr10:22124400-22163000	Weak transcription	Ovary	ovary
7	chr10:22126200-22134800	Weak transcription	Gastric	stomach
8	chr10:22126200-22138200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:22126200-22138400	Weak transcription	Adipose Nuclei	Adipose
10	chr10:22126200-22138600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:22126200-22138600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:22126200-22161800	Weak transcription	Left Ventricle	heart
13	chr10:22126400-22138400	Weak transcription	Liver	Liver
14	chr10:22126600-22151000	Weak transcription	Fetal Stomach	stomach
15	chr10:22126600-22161800	Weak transcription	Pancreas	Pancrea
16	chr10:22127000-22134800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:22128000-22133200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:22130400-22134600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:22131000-22133400	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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