Variant report

Variant	rs61567680
Chromosome Location	chr10:22123480-22123481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12354471	0.81[AFR][1000 genomes]
rs41277392	0.89[EUR][1000 genomes]
rs57115266	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs57514919	0.89[EUR][1000 genomes]
rs57727726	0.89[EUR][1000 genomes]
rs57988650	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58341039	1.00[EUR][1000 genomes]
rs58900057	0.89[EUR][1000 genomes]
rs60111702	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60565470	0.89[EUR][1000 genomes]
rs60793805	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60795110	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7071519	0.89[EUR][1000 genomes]
rs7072340	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7080207	1.00[EUR][1000 genomes]
rs7082546	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7093279	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7094231	0.81[EUR][1000 genomes]
rs7096530	0.81[EUR][1000 genomes]
rs7895753	0.89[EUR][1000 genomes]
rs7896281	0.89[EUR][1000 genomes]
rs7899191	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7903144	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7909529	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7909582	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7916536	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7916606	1.00[EUR][1000 genomes]
rs7919823	0.89[EUR][1000 genomes]
rs7923514	0.89[EUR][1000 genomes]
rs7924175	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7924290	0.89[EUR][1000 genomes]
rs9663279	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9663287	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22114200-22125000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:22119200-22123800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:22119600-22136800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:22121600-22138400	Weak transcription	Primary B cells from cord blood	blood
5	chr10:22122000-22124200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:22122000-22124200	ZNF genes & repeats	Fetal Stomach	stomach
7	chr10:22122600-22123600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr10:22123000-22124200	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr10:22123200-22123800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:22123200-22123800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:22123200-22123800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:22123200-22124000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:22123200-22124000	ZNF genes & repeats	Gastric	stomach
14	chr10:22123200-22124000	ZNF genes & repeats	Left Ventricle	heart
15	chr10:22123200-22124200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
16	chr10:22123200-22124200	ZNF genes & repeats	Pancreas	Pancrea
17	chr10:22123200-22125000	ZNF genes & repeats	Liver	Liver
18	chr10:22123200-22126000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr10:22123200-22138600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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