Variant report

Variant	rs41277392
Chromosome Location	chr10:22032632-22032633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22028646..22030988-chr10:22031171..22034397,3	K562	blood:
2	chr10:21814758..21816437-chr10:22031301..22033620,2	MCF-7	breast:
3	chr10:22032512..22034236-chr10:22040001..22042457,2	MCF-7	breast:
4	chr10:22032480..22035941-chr10:22037308..22040299,3	K562	blood:
5	chr10:22030135..22033063-chr10:22034541..22036307,2	K562	blood:
6	chr10:22026744..22030038-chr10:22030845..22033981,3	MCF-7	breast:
7	chr10:21821596..21824458-chr10:22031308..22033565,2	MCF-7	breast:
8	chr10:22021257..22022866-chr10:22032491..22034519,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000078403	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12354471	0.87[AMR][1000 genomes]
rs57115266	1.00[EUR][1000 genomes]
rs57988650	0.89[EUR][1000 genomes]
rs58341039	0.89[EUR][1000 genomes]
rs60111702	0.89[EUR][1000 genomes]
rs60565470	1.00[EUR][1000 genomes]
rs60793805	0.89[EUR][1000 genomes]
rs60795110	1.00[EUR][1000 genomes]
rs61567680	0.89[EUR][1000 genomes]
rs7071519	1.00[EUR][1000 genomes]
rs7072340	0.89[EUR][1000 genomes]
rs7080207	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7082546	0.89[EUR][1000 genomes]
rs7093279	0.95[EUR][1000 genomes]
rs7895753	1.00[EUR][1000 genomes]
rs7896281	1.00[EUR][1000 genomes]
rs7899191	1.00[EUR][1000 genomes]
rs7903144	1.00[EUR][1000 genomes]
rs7909529	1.00[EUR][1000 genomes]
rs7909582	0.95[EUR][1000 genomes]
rs7916606	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7919823	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7924175	1.00[EUR][1000 genomes]
rs7924290	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9663279	1.00[EUR][1000 genomes]
rs9663287	1.00[EUR][1000 genomes]
rs9665526	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv540513	chr10:22031022-22065456	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22014600-22033200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:22015000-22034200	Strong transcription	Dnd41	blood
3	chr10:22015200-22034200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr10:22015200-22034400	Strong transcription	Primary B cells from peripheral blood	blood
5	chr10:22016800-22038800	Weak transcription	Stomach Mucosa	stomach
6	chr10:22018200-22034400	Strong transcription	Fetal Intestine Large	intestine
7	chr10:22019800-22034400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:22021200-22036000	Weak transcription	Fetal Brain Male	brain
9	chr10:22021400-22034400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:22021600-22032800	Strong transcription	HepG2	liver
11	chr10:22021600-22035000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr10:22021800-22034400	Strong transcription	Placenta	Placenta
13	chr10:22022600-22034000	Strong transcription	Adipose Nuclei	Adipose
14	chr10:22022600-22034400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:22022600-22034400	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr10:22022600-22034400	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr10:22022800-22035400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:22022800-22037800	Strong transcription	Fetal Muscle Trunk	muscle
19	chr10:22023000-22033800	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr10:22023000-22034200	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:22023000-22034400	Strong transcription	A549	lung
22	chr10:22023000-22046200	Weak transcription	Right Atrium	heart
23	chr10:22023200-22034000	Strong transcription	Osteobl	bone
24	chr10:22023200-22039800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr10:22023600-22035400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:22023800-22034400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:22023800-22036600	Strong transcription	Fetal Muscle Leg	muscle
28	chr10:22024200-22034400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr10:22024200-22034400	Strong transcription	Left Ventricle	heart
30	chr10:22024200-22034400	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr10:22024200-22034400	Strong transcription	Stomach Smooth Muscle	stomach
32	chr10:22024200-22036000	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:22024200-22037000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:22024400-22033800	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:22024400-22034400	Strong transcription	NHLF	lung
36	chr10:22024600-22039000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:22024800-22039800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:22025800-22034000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:22026000-22034400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr10:22026200-22033200	Weak transcription	Right Ventricle	heart
41	chr10:22026400-22034400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:22026600-22034400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:22026600-22034400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:22026800-22034400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:22026800-22034400	Strong transcription	Fetal Thymus	thymus
46	chr10:22027000-22032800	Strong transcription	NHEK	skin
47	chr10:22027000-22034400	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:22027000-22034400	Strong transcription	HSMM	muscle
49	chr10:22027200-22034000	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr10:22027200-22034000	Strong transcription	Duodenum Mucosa	Duodenum

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