Variant report

Variant	rs60111702
Chromosome Location	chr10:22184071-22184072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22183777..22186211-chr10:22187321..22190251,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12354471	0.84[AFR][1000 genomes]
rs41277392	0.89[EUR][1000 genomes]
rs57115266	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs57514919	0.89[EUR][1000 genomes]
rs57727726	0.89[EUR][1000 genomes]
rs57988650	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58341039	1.00[EUR][1000 genomes]
rs58900057	0.89[EUR][1000 genomes]
rs60565470	0.89[EUR][1000 genomes]
rs60793805	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60795110	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61567680	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7071519	0.89[EUR][1000 genomes]
rs7072340	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7080207	1.00[EUR][1000 genomes]
rs7082546	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7093279	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7094231	0.81[EUR][1000 genomes]
rs7096530	0.81[EUR][1000 genomes]
rs7895753	0.89[EUR][1000 genomes]
rs7896281	0.89[EUR][1000 genomes]
rs7899191	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7903144	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7909529	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7909582	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7916536	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7916606	1.00[EUR][1000 genomes]
rs7919823	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7923514	0.89[EUR][1000 genomes]
rs7924175	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7924290	0.89[EUR][1000 genomes]
rs9663279	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9663287	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1048924	chr10:22177164-22296409	Enhancers Bivalent/Poised TSS Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22153000-22200600	Weak transcription	Osteobl	bone
2	chr10:22160400-22195600	Weak transcription	NHEK	skin
3	chr10:22161400-22207600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:22162200-22201600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:22163000-22188000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:22163400-22191200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:22164400-22184800	Weak transcription	Spleen	Spleen
8	chr10:22164400-22186400	Weak transcription	Esophagus	oesophagus
9	chr10:22164600-22188200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:22164800-22187800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:22167200-22196600	Weak transcription	Small Intestine	intestine
12	chr10:22167600-22193400	Weak transcription	Brain Substantia Nigra	brain
13	chr10:22170600-22188000	Weak transcription	Ovary	ovary
14	chr10:22170600-22192200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:22170600-22200200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:22171200-22184800	Weak transcription	Right Ventricle	heart
17	chr10:22171200-22192400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr10:22171200-22197000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:22173400-22190800	Weak transcription	Stomach Mucosa	stomach
20	chr10:22178400-22200200	Weak transcription	Thymus	Thymus
21	chr10:22178600-22184800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:22178800-22184400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:22179000-22188000	Weak transcription	Gastric	stomach
24	chr10:22179000-22201600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr10:22179000-22224000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr10:22179200-22192000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:22179400-22194400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr10:22179600-22184200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:22179600-22184800	Weak transcription	Lung	lung
30	chr10:22179600-22188000	Weak transcription	Pancreas	Pancrea
31	chr10:22179600-22196000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:22179800-22187800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:22179800-22188200	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr10:22180000-22184800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:22180000-22200600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr10:22180200-22188000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:22180400-22188800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:22180800-22188000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:22180800-22190200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:22181000-22193000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr10:22181200-22196400	Weak transcription	Fetal Heart	heart
42	chr10:22181600-22192400	Weak transcription	NH-A	brain
43	chr10:22182000-22192000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr10:22182000-22200800	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr10:22182200-22189800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:22182400-22188200	Weak transcription	Colon Smooth Muscle	Colon
47	chr10:22182400-22188800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr10:22182400-22198000	Weak transcription	A549	lung
49	chr10:22182600-22192000	Weak transcription	Placenta	Placenta
50	chr10:22183000-22187800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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