Variant report

Variant	rs7093279
Chromosome Location	chr10:22087030-22087031
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22079504..22081110-chr10:22086680..22089399,2	K562	blood:
2	chr10:22086256..22088772-chr10:22096451..22099042,2	K562	blood:
3	chr10:22079176..22082090-chr10:22084564..22087079,2	MCF-7	breast:
4	chr10:22085974..22088935-chr10:22094084..22096288,4	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12354471	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs41277392	0.95[EUR][1000 genomes]
rs57115266	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs57988650	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs58341039	0.85[EUR][1000 genomes]
rs60111702	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs60565470	0.95[EUR][1000 genomes]
rs60793805	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs60795110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61567680	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7071519	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7072340	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7080207	0.85[EUR][1000 genomes]
rs7082546	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7895753	0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7896281	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7899191	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7903144	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7909529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7909582	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7916606	0.85[EUR][1000 genomes]
rs7919823	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7923514	1.00[ASW][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7924175	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7924290	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9663279	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9663287	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9665526	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv3389523	chr10:22074995-22097153	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22048000-22109000	Weak transcription	Ovary	ovary
2	chr10:22048400-22087400	Weak transcription	Aorta	Aorta
3	chr10:22048400-22094800	Weak transcription	Small Intestine	intestine
4	chr10:22048400-22099200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:22048800-22114000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:22055400-22095600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:22062200-22088800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:22066000-22113000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:22074200-22105200	Weak transcription	Lung	lung
10	chr10:22074400-22099200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:22074800-22089800	Weak transcription	Fetal Intestine Small	intestine
12	chr10:22074800-22099000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:22074800-22100800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:22074800-22123200	Weak transcription	Left Ventricle	heart
15	chr10:22076800-22089800	Weak transcription	Fetal Stomach	stomach
16	chr10:22077800-22096200	Weak transcription	Gastric	stomach
17	chr10:22078000-22096200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:22079800-22087200	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:22081800-22089200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:22084400-22087400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:22084600-22090600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:22085000-22091000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:22085200-22089200	Enhancers	Primary T cells from cord blood	blood
24	chr10:22085400-22087400	Strong transcription	Primary hematopoietic stem cells	blood
25	chr10:22085600-22087800	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr10:22085600-22089400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr10:22085600-22102800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr10:22085800-22087800	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr10:22085800-22087800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr10:22085800-22088400	Strong transcription	Liver	Liver
31	chr10:22085800-22090600	Weak transcription	Brain Anterior Caudate	brain
32	chr10:22086000-22087600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:22086000-22087600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr10:22086000-22089600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:22086200-22087800	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr10:22086200-22088000	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr10:22086200-22099200	Weak transcription	HSMM	muscle
38	chr10:22086400-22087600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:22086400-22087600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr10:22086400-22087600	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr10:22086400-22088000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:22086600-22087200	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr10:22086600-22087400	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr10:22086600-22087400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:22086600-22087400	Strong transcription	Stomach Smooth Muscle	stomach
46	chr10:22086600-22087600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:22086600-22087600	Enhancers	Primary T cells fromperipheralblood	blood
48	chr10:22086600-22087800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr10:22086600-22087800	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr10:22086600-22088600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links