Variant report

Variant	rs59879358
Chromosome Location	chr18:45300691-45300692
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59404059	1.00[AMR][1000 genomes]
rs60000513	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61226589	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439752	1.00[AMR][1000 genomes]
rs73439770	1.00[AMR][1000 genomes]
rs73439777	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8085039	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv1008833	chr18:45299372-45304141	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45299600-45304600	Weak transcription	Placenta	Placenta
2	chr18:45299600-45306800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr18:45300600-45300800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr18:45300600-45300800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr18:45300600-45300800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr18:45300600-45300800	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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