Variant report

Variant	rs61226589
Chromosome Location	chr18:45283948-45283949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56037605	1.00[EUR][1000 genomes]
rs56370624	1.00[EUR][1000 genomes]
rs58548260	1.00[EUR][1000 genomes]
rs59260319	1.00[EUR][1000 genomes]
rs59404059	1.00[AMR][1000 genomes]
rs59822024	1.00[EUR][1000 genomes]
rs59879358	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60000513	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61151033	1.00[EUR][1000 genomes]
rs61448280	1.00[EUR][1000 genomes]
rs7227396	1.00[EUR][1000 genomes]
rs73439752	1.00[AMR][1000 genomes]
rs73439770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73439777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73439794	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956512	1.00[EUR][1000 genomes]
rs8085039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8093124	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45282800-45300600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:45283200-45284000	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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