Variant report

Variant	rs59260319
Chromosome Location	chr18:45278512-45278513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56037605	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56370624	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58548260	1.00[EUR][1000 genomes]
rs59011446	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59822024	1.00[EUR][1000 genomes]
rs60000513	1.00[EUR][1000 genomes]
rs61151033	1.00[EUR][1000 genomes]
rs61226589	1.00[EUR][1000 genomes]
rs61448280	1.00[EUR][1000 genomes]
rs7227396	1.00[EUR][1000 genomes]
rs73439770	1.00[EUR][1000 genomes]
rs73439777	1.00[EUR][1000 genomes]
rs73439794	1.00[EUR][1000 genomes]
rs73956512	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8085039	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8093124	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45275600-45280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:45275600-45280800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr18:45276000-45280400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr18:45276000-45280800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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